Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 4
- plasma membrane 4
- vacuole 5
- golgi 4
- extracellular 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
16595579
nucleus: 26228564 |
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G010900.1 | Wheat | extracellular | 88.14 | 89.35 |
| TraesCS1D01G001000.1 | Wheat | extracellular | 87.8 | 86.91 |
| TraesCS1D01G001400.1 | Wheat | nucleus | 55.59 | 80.79 |
| TraesCS1D01G001200.1 | Wheat | extracellular | 87.12 | 78.59 |
| HORVU1Hr1G000680.1 | Barley | vacuole | 42.71 | 58.33 |
| HORVU1Hr1G000700.1 | Barley | extracellular, vacuole | 58.64 | 50.44 |
| TraesCS1D01G000700.1 | Wheat | unclear | 27.46 | 40.3 |
| TraesCS1D01G001300.1 | Wheat | vacuole | 43.73 | 39.81 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G001100.1 | EnsemblPlantsGene:TraesCS1D01G001100 | Gene3D:1.10.110.10 | GO:GO:0003674 | GO:GO:0045735 | InterPro:Bifun_inhib/LTP/seed_sf |
| InterPro:Bifunc_inhib/LTP/seed_store | InterPro:Glia_glutenin | PFAM:PF13016 | PRINTS:PR00208 | PRINTS:PR00209 | SEG:seg |
| SignalP:SignalP-noTM | SMART:SM00499 | SUPFAM:SSF47699 | TIGR:cd00261 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr1D:-:259574..260615
Molecular Weight (calculated)
33591.4 Da
IEP (calculated)
7.725
GRAVY (calculated)
-0.627
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTLLILTIL AMAITIGTAN MQVDPSSQVQ WPQQQPVPQP HQPFSQQPQQ TFPQPQQTFP HQPQQQFPQP QQPQQQFLQP QQPFPQQPQQ PYPQQPQQPF
101: PQTQQPQQLF PQSQQPQQQF SQPQQQFPQP QQPQQSFPQQ QPPFIQPSLQ QQVNPCKNFL LQQCKPVSLV SSLWSMIWPQ SDCQVMRQQC CQQLAQIPQQ
201: LQCAAIHTVI HSIIMQQEQQ QGMHILLPLY QQQQVGQGTL VQGQGIIQPQ QPAQLEAIRS LVLQTLPTMC NVYVPPECSI IKAPFSSVVA GIGGQ
101: PQTQQPQQLF PQSQQPQQQF SQPQQQFPQP QQPQQSFPQQ QPPFIQPSLQ QQVNPCKNFL LQQCKPVSLV SSLWSMIWPQ SDCQVMRQQC CQQLAQIPQQ
201: LQCAAIHTVI HSIIMQQEQQ QGMHILLPLY QQQQVGQGTL VQGQGIIQPQ QPAQLEAIRS LVLQTLPTMC NVYVPPECSI IKAPFSSVVA GIGGQ
001: MASSKMFLVA SLLMALMFSS MITSSRAAQQ FTKKQTLKPK YFRPRFPQFP RPGFPNNPAL PSFPQFPRPG FPTNPMPFPQ FPRPGFPSNP TPEFPQFPGQ
101: SFPKFPFSSP FSQYPKPAMP GSPVTALSAP PLSLELQLPS LKLSPPNLMA YVKIIINIS
101: SFPKFPFSSP FSQYPKPAMP GSPVTALSAP PLSLELQLPS LKLSPPNLMA YVKIIINIS
Arabidopsis Description
unknown protein; LOCATED IN: endomembrane system; Has 3456 Blast hits to 2147 proteins in 337 species: Archae - 4; Bacteria - 491; Metazoa - 997; Fungi - 201; Plants - 1105; Viruses - 207; Other Eukaryotes - 451 (source: NCBI BLink). [Source:TAIR;Acc:AT4G33585]
SUBAcon: [vacuole,extracellular]
SUBAcon: [vacuole,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.