Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G010900.1 | Wheat | extracellular | 81.3 | 34.36 |
| TraesCS1B01G011000.1 | Wheat | endoplasmic reticulum | 78.05 | 32.99 |
| TraesCS1D01G001200.1 | Wheat | extracellular | 83.74 | 31.5 |
| HORVU1Hr1G000680.1 | Barley | vacuole | 54.47 | 31.02 |
| TraesCS1B01G010800.1 | Wheat | vacuole | 82.93 | 29.82 |
| TraesCS6B01G065900.1 | Wheat | plastid | 29.27 | 27.91 |
| TraesCS1B01G010500.1 | Wheat | extracellular | 65.85 | 27.27 |
| TraesCS1B01G010400.1 | Wheat | golgi | 64.23 | 26.16 |
| TraesCS1B01G011300.1 | Wheat | golgi | 39.84 | 24.14 |
| TraesCS6B01G065800.1 | Wheat | vacuole | 53.66 | 20.89 |
| TraesCS6B01G086500.1 | Wheat | vacuole | 52.85 | 20.7 |
| TraesCS6B01G066000.1 | Wheat | vacuole | 45.53 | 20.0 |
| HORVU1Hr1G000700.1 | Barley | extracellular, vacuole | 50.41 | 18.08 |
| TraesCS1B01G010600.1 | Wheat | vacuole | 43.09 | 16.72 |
| TraesCS6B01G066100.1 | Wheat | extracellular | 28.46 | 15.49 |
| TraesCS6B01G065600.1 | Wheat | endoplasmic reticulum, extracellular | 25.2 | 12.76 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G010700.1 | EnsemblPlantsGene:TraesCS1B01G010700 | Gene3D:1.10.110.10 | InterPro:Bifun_inhib/LTP/seed_sf | InterPro:Bifunc_inhib/LTP/seed_store | ncoils:Coil |
| PANTHER:PTHR33454 | PFAM:PF00234 | PRINTS:PR00209 | SEG:seg | SUPFAM:SSF47699 | TIGR:cd00261 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1B:+:5057629..5058082
Molecular Weight (calculated)
13740.6 Da
IEP (calculated)
6.211
GRAVY (calculated)
-0.352
Length
123 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQQCCQELA QIPQQLQCAA IHSVVHSIIM QQQEQEQEQQ QQQQQQQQQG MRIFFPLSRQ QHVGQGTLVQ GQGIIQPQQP AQLEAIRSLV LQTLPTICNV
101: YVPPECSNIR APFASIVAGI GGQ
101: YVPPECSNIR APFASIVAGI GGQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.