Factsheet for TraesCS1B01G011000.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

endoplasmic reticulum 4
plasma membrane 4
vacuole 5
golgi 4
extracellular 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

endoplasmic reticulum: 21617248

plastid: 24136528

gfp PMID: 21617248 doi

M Francin-Allami, A Saumonneau, L Lavenant, A Bouder, I Sparkes, C Hawes, Y Popineau

UR1268 Biopolymères Interactions Assemblages, INRA, BP71627 Nantes cedex 03, France. allami@nantes.inra.fr

msms PMID: 24136528 doi

A Nozawa, Y Tozawa

Cell-Free Science and Technology Research Center, Ehime University, Matsuyama, Ehime, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G001000.1	Wheat	extracellular	92.44	90.27
TraesCS1B01G010900.1	Wheat	extracellular	86.6	86.6
TraesCS1B01G010700.1	Wheat	cytosol	32.99	78.05
TraesCS1B01G010500.1	Wheat	extracellular	77.32	75.76
TraesCS1B01G010400.1	Wheat	golgi	74.23	71.52
TraesCS1B01G010800.1	Wheat	vacuole	83.16	70.76
HORVU1Hr1G000680.1	Barley	vacuole	45.02	60.65
HORVU1Hr1G000700.1	Barley	extracellular, vacuole	61.17	51.9
TraesCS6B01G066100.1	Wheat	extracellular	36.43	46.9
TraesCS6B01G066000.1	Wheat	vacuole	44.33	46.07
TraesCS6B01G065600.1	Wheat	endoplasmic reticulum, extracellular	35.05	41.98
TraesCS6B01G086500.1	Wheat	vacuole	44.33	41.08
TraesCS1B01G011300.1	Wheat	golgi	28.52	40.89
TraesCS1B01G010600.1	Wheat	vacuole	44.33	40.69
TraesCS6B01G065800.1	Wheat	vacuole	43.64	40.19
TraesCS6B01G065900.1	Wheat	plastid	14.78	33.33

Protein Annotations

EnsemblPlants:TraesCS1B01G011000.1	EnsemblPlantsGene:TraesCS1B01G011000	Gene3D:1.10.110.10	GO:GO:0003674	GO:GO:0045735	InterPro:Bifun_inhib/LTP/seed_sf
InterPro:Bifunc_inhib/LTP/seed_store	InterPro:Glia_glutenin	PFAM:PF13016	PRINTS:PR00208	PRINTS:PR00209	SEG:seg
SignalP:SignalP-noTM	SMART:SM00499	SUPFAM:SSF47699	TIGR:cd00261	MapMan:35.1	:

Description

No Description!

Coordinates

chr1B:+:5141976..5143004

Molecular Weight (calculated)

32968.8 Da

IEP (calculated)

8.215

GRAVY (calculated)

-0.523

Length

291 amino acids

Sequence
(BLAST)

001: MKTLLILTIL AMAITIATAN MQADPSGQVQ WPQQQPFLQP HQPFSQQPQQ IFPQPQQTFP HQPQQQFPQP QQPQQQFLQP RQPFPQQPQQ PYPQQPQQPF
101: PQTQQPQQPF PQSKQPQQPF PQPQQPQQSF PQQQPSLIQQ SLQQQLNPCK NFLLQQCKPV SLVSSLWSII LPPSDCQVMR QQCCQQLAQI PQQLQCAAIH
201: SVVHSIIMQQ EQQEQLQGVQ ILVPLSQQQQ VGQGILVQGQ GIIQPQQPAQ LEVIRSLVLQ TLPTMCNVYV PPYCSTIRAP FASIVASIGG Q

Best Arabidopsis Sequence Match ( AT4G33585.1 )
(BLAST)

001: MASSKMFLVA SLLMALMFSS MITSSRAAQQ FTKKQTLKPK YFRPRFPQFP RPGFPNNPAL PSFPQFPRPG FPTNPMPFPQ FPRPGFPSNP TPEFPQFPGQ
101: SFPKFPFSSP FSQYPKPAMP GSPVTALSAP PLSLELQLPS LKLSPPNLMA YVKIIINIS

Arabidopsis Description

unknown protein; LOCATED IN: endomembrane system; Has 3456 Blast hits to 2147 proteins in 337 species: Archae - 4; Bacteria - 491; Metazoa - 997; Fungi - 201; Plants - 1105; Viruses - 207; Other Eukaryotes - 451 (source: NCBI BLink). [Source:TAIR;Acc:AT4G33585]
SUBAcon: [vacuole,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.