Factsheet for TraesCS1B01G010400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

endoplasmic reticulum 4
plasma membrane 4
vacuole 6
golgi 4
extracellular 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

golgi: 23128297

gfp, msms PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G010500.1	Wheat	extracellular	86.09	87.54
TraesCS1D01G001400.1	Wheat	nucleus	57.62	85.71
TraesCS1A01G007400.1	Wheat	extracellular	78.81	79.33
TraesCS1B01G011000.1	Wheat	endoplasmic reticulum	71.52	74.23
TraesCS1B01G010900.1	Wheat	extracellular	68.54	71.13
TraesCS1B01G010800.1	Wheat	vacuole	73.51	64.91
TraesCS1B01G010700.1	Wheat	cytosol	26.16	64.23
HORVU1Hr1G000680.1	Barley	vacuole	39.07	54.63
HORVU1Hr1G000700.1	Barley	extracellular, vacuole	52.98	46.65
TraesCS6B01G066100.1	Wheat	extracellular	34.77	46.46
TraesCS6B01G066000.1	Wheat	vacuole	40.73	43.93
TraesCS1B01G010600.1	Wheat	vacuole	42.38	40.38
TraesCS6B01G065600.1	Wheat	endoplasmic reticulum, extracellular	31.46	39.09
TraesCS6B01G065800.1	Wheat	vacuole	40.4	38.61
TraesCS6B01G086500.1	Wheat	vacuole	39.74	38.22
TraesCS1B01G011300.1	Wheat	golgi	24.17	35.96
TraesCS6B01G065900.1	Wheat	plastid	11.92	27.91

Protein Annotations

EnsemblPlants:TraesCS1B01G010400.1	EnsemblPlantsGene:TraesCS1B01G010400	Gene3D:1.10.110.10	GO:GO:0003674	GO:GO:0045735	InterPro:Bifun_inhib/LTP/seed_sf
InterPro:Bifunc_inhib/LTP/seed_store	InterPro:Glia_glutenin	PANTHER:PTHR33454	PFAM:PF13016	PRINTS:PR00208	PRINTS:PR00209
SEG:seg	SignalP:SignalP-noTM	SMART:SM00499	SUPFAM:SSF47699	TIGR:cd00261	MapMan:35.1

Description

No Description!

Coordinates

chr1B:+:4965593..4966632

Molecular Weight (calculated)

34405.2 Da

IEP (calculated)

7.716

GRAVY (calculated)

-0.708

Length

302 amino acids

Sequence
(BLAST)

001: MKTLLILTIL AMATTIATAN MQVDPSGQVQ WPQQQPFPQP QQPFCQQPQR TIPQPHQTFH HQPQQTFPQP QQTYPHQPQQ QFPQTQQPQQ PFPQPQQTFP
101: QQPQLPFPQQ RQQPFPQPQQ PQQPFPQSQQ PQQPFPQPQQ QFPQPQQPQQ SFPQQQQPAI QSFLQQQMNP CKNFLLQQCN HVSLVSSLVS IILPRSDCQV
201: MQQQCCQQLA QIPQQLQCAA IHSVAHSIIM QQEQQQGVPI LRPLFQLAQG LGIIQPQQPA QLEGIRSLVL KTLPTMCNVY VPPDCSTINV PYANIDDGIG
301: GQ

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.