Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- plastid 1
- endoplasmic reticulum 4
- plasma membrane 4
- vacuole 6
- golgi 4
- extracellular 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G066100.1 | Wheat | extracellular | 73.21 | 90.71 |
| TraesCS6B01G065600.1 | Wheat | endoplasmic reticulum, extracellular | 72.86 | 83.95 |
| TraesCSU01G108700.1 | Wheat | plastid | 84.29 | 83.69 |
| TraesCS6B01G065800.1 | Wheat | vacuole | 84.64 | 75.0 |
| TraesCS6B01G086500.1 | Wheat | vacuole | 83.21 | 74.2 |
| TraesCS6B01G065900.1 | Wheat | plastid | 25.71 | 55.81 |
| TraesCS1B01G010700.1 | Wheat | cytosol | 20.0 | 45.53 |
| TraesCS1B01G010900.1 | Wheat | extracellular | 46.07 | 44.33 |
| TraesCS1B01G011000.1 | Wheat | endoplasmic reticulum | 46.07 | 44.33 |
| TraesCS1B01G011300.1 | Wheat | golgi | 30.36 | 41.87 |
| TraesCS1B01G010500.1 | Wheat | extracellular | 43.93 | 41.41 |
| TraesCS1B01G010400.1 | Wheat | golgi | 43.93 | 40.73 |
| TraesCS1B01G010800.1 | Wheat | vacuole | 48.21 | 39.47 |
| TraesCS1B01G010600.1 | Wheat | vacuole | 38.21 | 33.75 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G066000.1 | EnsemblPlantsGene:TraesCS6B01G066000 | Gene3D:1.10.110.10 | GO:GO:0003674 | GO:GO:0045735 | InterPro:Bifun_inhib/LTP/seed_sf |
| InterPro:Bifunc_inhib/LTP/seed_store | InterPro:Glia_glutenin | ncoils:Coil | PFAM:PF00234 | PRINTS:PR00208 | PRINTS:PR00209 |
| SEG:seg | SignalP:SignalP-noTM | SMART:SM00499 | SUPFAM:SSF47699 | TIGR:cd00261 | MapMan:35.1 |
Description
No Description!
Coordinates
chr6B:+:43868418..43869302
Molecular Weight (calculated)
32286.4 Da
IEP (calculated)
7.840
GRAVY (calculated)
-0.829
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTFLILALL AIVATTTTTA VRVPVPQLQP QNPSQQQPQE QVPLVQQQQF LGQQQQQFPG QQQPFPPQQP YPQPQPFLPQ LPYPQPQPFP PQQSYPQPQP
101: QYPQPQQPIS QQQAQLLQQQ QQQQQQQQQQ QQILQQILQQ QLIPCRDVVL QQPNIAHASS QVSQQSYQLL QQLCCQQLWQ TPEQSRCQAI HNVIHAIILH
201: HRHQQQQQQQ QQQQQQPSSQ GFFQPSQQNP QAQGFVQPQQ LPQFEEIRNL ALQTLPAMCN VYIPPYCSTT IAPFGIMSTN
101: QYPQPQQPIS QQQAQLLQQQ QQQQQQQQQQ QQILQQILQQ QLIPCRDVVL QQPNIAHASS QVSQQSYQLL QQLCCQQLWQ TPEQSRCQAI HNVIHAIILH
201: HRHQQQQQQQ QQQQQQPSSQ GFFQPSQQNP QAQGFVQPQQ LPQFEEIRNL ALQTLPAMCN VYIPPYCSTT IAPFGIMSTN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.