Subcellular Localization
min:
: max
Winner_takes_all: unclear, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22160430
unclear: 25769308 nucleus: 26228564 |
msms PMID:
22160430
doi
Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.
msms PMID:
25769308
doi
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS1B01G319400.1 | Wheat | cytosol | 100.0 | 100.0 |
HORVU0Hr1G001270.1 | Barley | cytosol | 100.0 | 100.0 |
TraesCS2D01G097500.1 | Wheat | cytosol | 99.33 | 99.33 |
KRH73482 | Soybean | cytosol | 99.33 | 99.33 |
KRH64911 | Soybean | cytosol | 99.33 | 99.33 |
KRH57715 | Soybean | cytosol | 99.33 | 99.33 |
KRH14671 | Soybean | cytosol | 99.33 | 99.33 |
KRG94210 | Soybean | nucleus | 99.33 | 99.33 |
EES19728 | Sorghum | cytosol | 99.33 | 99.33 |
TraesCS4D01G179800.1 | Wheat | cytosol | 98.66 | 98.66 |
CDX70966 | Canola | cytosol | 97.99 | 97.99 |
CDY51259 | Canola | cytosol | 97.99 | 97.99 |
CDY47377 | Canola | cytosol | 97.99 | 97.99 |
CDY35428 | Canola | cytosol | 97.99 | 97.99 |
CDY27197 | Canola | cytosol | 97.99 | 97.99 |
CDY22503 | Canola | cytosol | 97.99 | 97.99 |
CDY16599 | Canola | cytosol | 97.99 | 97.99 |
CDY09106 | Canola | cytosol | 97.99 | 97.99 |
CDX88824 | Canola | cytosol | 97.99 | 97.99 |
CDX87950 | Canola | cytosol | 97.99 | 97.99 |
CDX76012 | Canola | cytosol | 97.99 | 97.99 |
CDX67656 | Canola | cytosol | 97.99 | 97.99 |
Zm00001d007194_P001 | Maize | cytosol | 62.42 | 94.9 |
Zm00001d010650_P001 | Maize | cytosol | 63.09 | 83.19 |
Zm00001d040323_P001 | Maize | cytosol | 62.42 | 82.3 |
TraesCS2D01G315600.1 | Wheat | mitochondrion | 17.45 | 10.66 |
TraesCS2D01G097600.1 | Wheat | cytosol | 10.74 | 6.48 |
Protein Annotations
EnsemblPlants:TraesCS1D01G308100.1 | EnsemblPlantsGene:TraesCS1D01G308100 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR23050 | PANTHER:PTHR23050:SF250 |
PFAM:PF13499 | PFscan:PS50222 | ScanProsite:PS00018 | SMART:SM00054 | SUPFAM:SSF47473 | TIGR:cd00051 |
MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1D:-:404138268..404139952
Molecular Weight (calculated)
16846.6 Da
IEP (calculated)
3.881
GRAVY (calculated)
-0.602
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MADQLTDEQI AEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMARKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVDEMIREAD VDGDGQINYE EFVKVMMAK
101: ISAAELRHVM TNLGEKLTDE EVDEMIREAD VDGDGQINYE EFVKVMMAK
001: MADQLTDDQI SEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMARKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVDEMIKEAD VDGDGQINYE EFVKVMMAK
101: ISAAELRHVM TNLGEKLTDE EVDEMIKEAD VDGDGQINYE EFVKVMMAK
Arabidopsis Description
CAM5Calmodulin 5 [Source:UniProtKB/TrEMBL;Acc:F4IVN6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.