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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear, plastid, nucleus, cytosol

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plastid, unclear
Any Predictor:cytosol, mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
plastid: 22160430
unclear: 25769308
nucleus: 26228564
msms PMID: 22160430 doi
AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo
Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.
msms PMID: 25769308 doi
AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID: 26228564 doi
E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1B01G319400.1 Wheat cytosol 100.0 100.0
HORVU0Hr1G001270.1 Barley cytosol 100.0 100.0
TraesCS2D01G097500.1 Wheat cytosol 99.33 99.33
KRH73482 Soybean cytosol 99.33 99.33
KRH64911 Soybean cytosol 99.33 99.33
KRH57715 Soybean cytosol 99.33 99.33
KRH14671 Soybean cytosol 99.33 99.33
KRG94210 Soybean nucleus 99.33 99.33
EES19728 Sorghum cytosol 99.33 99.33
TraesCS4D01G179800.1 Wheat cytosol 98.66 98.66
CDX70966 Canola cytosol 97.99 97.99
CDY51259 Canola cytosol 97.99 97.99
CDY47377 Canola cytosol 97.99 97.99
CDY35428 Canola cytosol 97.99 97.99
CDY27197 Canola cytosol 97.99 97.99
CDY22503 Canola cytosol 97.99 97.99
CDY16599 Canola cytosol 97.99 97.99
CDY09106 Canola cytosol 97.99 97.99
CDX88824 Canola cytosol 97.99 97.99
CDX87950 Canola cytosol 97.99 97.99
CDX76012 Canola cytosol 97.99 97.99
CDX67656 Canola cytosol 97.99 97.99
Zm00001d007194_P001 Maize cytosol 62.42 94.9
Zm00001d010650_P001 Maize cytosol 63.09 83.19
Zm00001d040323_P001 Maize cytosol 62.42 82.3
TraesCS2D01G315600.1 Wheat mitochondrion 17.45 10.66
TraesCS2D01G097600.1 Wheat cytosol 10.74 6.48
Protein Annotations
EnsemblPlants:TraesCS1D01G308100.1EnsemblPlantsGene:TraesCS1D01G308100Gene3D:1.10.238.10GO:GO:0003674GO:GO:0005488GO:GO:0005509
InterPro:EF-hand-dom_pairInterPro:EF_Hand_1_Ca_BSInterPro:EF_hand_domInterPro:IPR002048PANTHER:PTHR23050PANTHER:PTHR23050:SF250
PFAM:PF13499PFscan:PS50222ScanProsite:PS00018SMART:SM00054SUPFAM:SSF47473TIGR:cd00051
MapMan:35.1:::::
Description
No Description!
Coordinates
chr1D:-:404138268..404139952
Molecular Weight (calculated)
16846.6 Da
IEP (calculated)
3.881
GRAVY (calculated)
-0.602
Length
149 amino acids
Sequence
(BLAST)
001: MADQLTDEQI AEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMARKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVDEMIREAD VDGDGQINYE EFVKVMMAK
Best Arabidopsis Sequence Match ( AT2G27030.1 )
(BLAST)
001: MADQLTDDQI SEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMARKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVDEMIKEAD VDGDGQINYE EFVKVMMAK
Arabidopsis Description
CAM5Calmodulin 5 [Source:UniProtKB/TrEMBL;Acc:F4IVN6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.