CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67656	Canola	cytosol	100.0	100.0
CDY51259	Canola	cytosol	100.0	100.0
CDY47377	Canola	cytosol	100.0	100.0
CDY35428	Canola	cytosol	100.0	100.0
CDY22503	Canola	cytosol	100.0	100.0
CDX76012	Canola	cytosol	100.0	100.0
TraesCS2A01G098100.1	Wheat	cytosol	98.66	98.66
OQU86675	Sorghum	cytosol	98.66	98.66
KRH64911	Soybean	cytosol	98.66	98.66
KRH57715	Soybean	cytosol	98.66	98.66
TraesCS2D01G097500.1	Wheat	cytosol	98.66	98.66
KRG94210	Soybean	nucleus	98.66	98.66
HORVU4Hr1G052210.2	Barley	cytosol	98.66	98.66
EES19728	Sorghum	cytosol	98.66	98.66
TraesCS4B01G178200.1	Wheat	cytosol, plastid, unclear	98.66	98.66
EER94946	Sorghum	cytosol	98.66	98.66
CDX70966	Canola	cytosol	98.66	98.66
CDY16599	Canola	cytosol	98.66	98.66
CDY09106	Canola	cytosol	98.66	98.66
CDX87950	Canola	cytosol	98.66	98.66
CDX88824	Canola	cytosol	98.66	98.66
HORVU0Hr1G001270.1	Barley	cytosol	97.99	97.99
TraesCS4D01G179800.1	Wheat	cytosol	97.99	97.99
TraesCS1B01G319400.1	Wheat	cytosol	97.99	97.99
TraesCS1D01G308100.1	Wheat	cytosol, nucleus, plastid, unclear	97.99	97.99
TraesCS4A01G126700.1	Wheat	cytosol	97.99	97.99
HORVU3Hr1G040040.1	Barley	cytosol	97.32	97.32
TraesCS3B01G214400.1	Wheat	cytosol	95.3	97.26
Zm00001d007194_P001	Maize	cytosol	61.74	93.88
Zm00001d010650_P001	Maize	cytosol	62.42	82.3
Zm00001d040323_P001	Maize	cytosol	61.74	81.42
CDY03451	Canola	cytosol	16.11	10.43
CDY34285	Canola	cytosol	16.11	10.43
CDY08935	Canola	cytosol, mitochondrion	16.11	10.21
CDY24838	Canola	mitochondrion	16.11	10.21
CDY37826	Canola	plastid	14.09	8.08
CDY33961	Canola	plastid	13.42	7.72

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	unigene:Bna.136	ProteinID:CDY22503.1	EnsemblPlants:CDY27197	ProteinID:CDY27197
ProteinID:CDY27197.1	ProteinID:CDY35428.1	ProteinID:CDY47377.1	ProteinID:CDY51259.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS
InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005856	GO:GO:0005874
GO:GO:0005886	GO:GO:0016020	EnsemblPlantsGene:GSBRNA2T00037069001	InterPro:IPR002048	PFAM:PF13499	ScanProsite:PS00018
PFscan:PS50222	PANTHER:PTHR23050	PANTHER:PTHR23050:SF250	GO:Q6LD03	UniProt:Q6LD03	SMART:SM00054
SUPFAM:SSF47473	UniParc:UPI000000036D	:	:	:	:

Description

BnaA09g36050DBnaA03g19320D protein [Source:UniProtKB/TrEMBL;Acc:Q6LD03]

Coordinates

chrLK032201:+:101667..104108

Molecular Weight (calculated)

16820.6 Da

IEP (calculated)

3.876

GRAVY (calculated)

-0.615

Length

149 amino acids

Sequence
(BLAST)

001: MADQLTDDQI SEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMARKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVDEMIKEAD VDGDGQINYE EFVKVMMAK

Best Arabidopsis Sequence Match ( AT2G27030.1 )
(BLAST)

001: MADQLTDDQI SEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMARKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVDEMIKEAD VDGDGQINYE EFVKVMMAK

Arabidopsis Description

CAM5Calmodulin 5 [Source:UniProtKB/TrEMBL;Acc:F4IVN6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.