CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22503	Canola	cytosol	100.0	100.0
CDY51259	Canola	cytosol	100.0	100.0
CDY47377	Canola	cytosol	100.0	100.0
CDY35428	Canola	cytosol	100.0	100.0
CDY27197	Canola	cytosol	100.0	100.0
CDX76012	Canola	cytosol	100.0	100.0
OQU86675	Sorghum	cytosol	98.66	98.66
KRH64911	Soybean	cytosol	98.66	98.66
KRH57715	Soybean	cytosol	98.66	98.66
EES19728	Sorghum	cytosol	98.66	98.66
KRG94210	Soybean	nucleus	98.66	98.66
TraesCS2A01G098100.1	Wheat	cytosol	98.66	98.66
HORVU4Hr1G052210.2	Barley	cytosol	98.66	98.66
CDX70966	Canola	cytosol	98.66	98.66
TraesCS2D01G097500.1	Wheat	cytosol	98.66	98.66
EER94946	Sorghum	cytosol	98.66	98.66
TraesCS4B01G178200.1	Wheat	cytosol, plastid, unclear	98.66	98.66
CDY16599	Canola	cytosol	98.66	98.66
CDY09106	Canola	cytosol	98.66	98.66
CDX87950	Canola	cytosol	98.66	98.66
CDX88824	Canola	cytosol	98.66	98.66
HORVU0Hr1G001270.1	Barley	cytosol	97.99	97.99
TraesCS4D01G179800.1	Wheat	cytosol	97.99	97.99
TraesCS1B01G319400.1	Wheat	cytosol	97.99	97.99
TraesCS1D01G308100.1	Wheat	cytosol, nucleus, plastid, unclear	97.99	97.99
TraesCS4A01G126700.1	Wheat	cytosol	97.99	97.99
HORVU3Hr1G040040.1	Barley	cytosol	97.32	97.32
TraesCS3B01G214400.1	Wheat	cytosol	95.3	97.26
Zm00001d007194_P001	Maize	cytosol	61.74	93.88
Zm00001d010650_P001	Maize	cytosol	62.42	82.3
Zm00001d040323_P001	Maize	cytosol	61.74	81.42
CDY03451	Canola	cytosol	16.11	10.43
CDY34285	Canola	cytosol	16.11	10.43
CDY08935	Canola	cytosol, mitochondrion	16.11	10.21
CDY24838	Canola	mitochondrion	16.11	10.21
CDY37826	Canola	plastid	14.09	8.08
CDY33961	Canola	plastid	13.42	7.72

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	unigene:Bna.136	EnsemblPlants:CDX67656	ProteinID:CDX67656	ProteinID:CDX67656.1
ProteinID:CDY22503.1	ProteinID:CDY27197.1	ProteinID:CDY35428.1	ProteinID:CDY47377.1	ProteinID:CDY51259.1	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005856
GO:GO:0005874	GO:GO:0005886	GO:GO:0016020	EnsemblPlantsGene:GSBRNA2T00098824001	InterPro:IPR002048	PFAM:PF13499
ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR23050	PANTHER:PTHR23050:SF250	GO:Q6LD03	UniProt:Q6LD03
SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI000000036D	:	:	:

Description

BnaA07g16960DBnaA03g19320D protein [Source:UniProtKB/TrEMBL;Acc:Q6LD03]

Coordinates

chrLK031787:-:1596413..1597939

Molecular Weight (calculated)

16820.6 Da

IEP (calculated)

3.876

GRAVY (calculated)

-0.615

Length

149 amino acids

Sequence
(BLAST)

001: MADQLTDDQI SEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMARKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVDEMIKEAD VDGDGQINYE EFVKVMMAK

Best Arabidopsis Sequence Match ( AT2G27030.3 )
(BLAST)

001: MADQLTDDQI SEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMARKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVDEMIKEAD VDGDGQINYE EFVKVMMAKR RGKRVMAAKR SSNSAEYKEK NGRRKSHCRI L

Arabidopsis Description

CAM5Calmodulin 5 [Source:UniProtKB/TrEMBL;Acc:F4IVN6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.