Factsheet for TraesCS4B01G178200.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 5
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22160430
unclear: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G052210.2	Barley	cytosol	100.0	100.0
EER94946	Sorghum	cytosol	100.0	100.0
TraesCS4D01G179800.1	Wheat	cytosol	99.33	99.33
TraesCS4A01G126700.1	Wheat	cytosol	99.33	99.33
TraesCS1B01G319400.1	Wheat	cytosol	99.33	99.33
CDX70966	Canola	cytosol	98.66	98.66
KRH73482	Soybean	cytosol	98.66	98.66
KRH64911	Soybean	cytosol	98.66	98.66
KRH57715	Soybean	cytosol	98.66	98.66
KRH14671	Soybean	cytosol	98.66	98.66
KRG94210	Soybean	nucleus	98.66	98.66
CDY47377	Canola	cytosol	98.66	98.66
CDY35428	Canola	cytosol	98.66	98.66
CDY27197	Canola	cytosol	98.66	98.66
CDY22503	Canola	cytosol	98.66	98.66
CDY16599	Canola	cytosol	98.66	98.66
CDY09106	Canola	cytosol	98.66	98.66
CDX88824	Canola	cytosol	98.66	98.66
CDX87950	Canola	cytosol	98.66	98.66
CDY51259	Canola	cytosol	98.66	98.66
CDX76012	Canola	cytosol	98.66	98.66
CDX67656	Canola	cytosol	98.66	98.66
TraesCS3B01G214400.1	Wheat	cytosol	96.64	98.63
Zm00001d007194_P001	Maize	cytosol	62.42	94.9
Zm00001d010650_P001	Maize	cytosol	63.09	83.19
Zm00001d040323_P001	Maize	cytosol	62.42	82.3
TraesCS2B01G336000.1	Wheat	mitochondrion	17.45	10.66
TraesCS2B01G336100.2	Wheat	mitochondrion, plastid	8.72	7.69
TraesCS2B01G113900.1	Wheat	cytosol	10.74	6.48

Protein Annotations

EnsemblPlants:TraesCS4B01G178200.1	EnsemblPlantsGene:TraesCS4B01G178200	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR23050	PANTHER:PTHR23050:SF250
PFAM:PF13499	PFscan:PS50222	ScanProsite:PS00018	SMART:SM00054	SUPFAM:SSF47473	TIGR:cd00051
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr4B:+:390279516..390281111

Molecular Weight (calculated)

16832.6 Da

IEP (calculated)

3.876

GRAVY (calculated)

-0.602

Length

149 amino acids

Sequence
(BLAST)

001: MADQLTDDQI AEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMARKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVDEMIREAD VDGDGQINYE EFVKVMMAK

Best Arabidopsis Sequence Match ( AT3G43810.2 )
(BLAST)

001: MADQLTDDQI SEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMARKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVDEMIREAD VDGDGQINYE EFVKVMMANH VWECASKLIK KRKKKKKKKK KKKTKNAKRN EKELIQHNPS QPESHRVPSR
201: LNLLCHRSHS CSIL

Arabidopsis Description

CAM7Calmodulin 7 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LPJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.