Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- mitochondrion 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G318000.1 | Wheat | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 62.72 | 82.81 |
| HORVU2Hr1G078990.11 | Barley | cytosol, peroxisome | 52.66 | 39.56 |
| KRH48828 | Soybean | cytosol | 11.83 | 39.22 |
| VIT_18s0001g07090.t01 | Wine grape | mitochondrion | 46.75 | 34.96 |
| GSMUA_Achr7P12840_001 | Banana | mitochondrion | 47.93 | 34.03 |
| GSMUA_Achr10P... | Banana | cytosol | 47.93 | 33.61 |
| TraesCS2B01G336000.1 | Wheat | mitochondrion | 46.75 | 32.38 |
| KRH72422 | Soybean | cytosol | 40.83 | 31.8 |
| KRH16812 | Soybean | cytosol | 40.24 | 31.34 |
| GSMUA_Achr3P06720_001 | Banana | cytosol | 44.97 | 31.28 |
| Bra013797.1-P | Field mustard | cytosol | 39.65 | 29.13 |
| CDY03451 | Canola | cytosol | 39.65 | 29.13 |
| CDY34285 | Canola | cytosol | 39.65 | 29.13 |
| Solyc04g074950.2.1 | Tomato | cytosol, mitochondrion, nucleus | 37.28 | 28.25 |
| Zm00001d003501_P001 | Maize | plastid | 47.93 | 27.0 |
| Solyc04g074960.2.1 | Tomato | cytosol, mitochondrion, plastid | 40.83 | 26.85 |
| Bra010491.1-P | Field mustard | cytosol | 33.14 | 26.79 |
| CDY24838 | Canola | mitochondrion | 36.69 | 26.38 |
| CDY08935 | Canola | cytosol, mitochondrion | 36.69 | 26.38 |
| AT4G24380.3 | Thale cress | mitochondrion | 38.46 | 24.9 |
| TraesCS2B01G113900.1 | Wheat | cytosol | 33.14 | 22.67 |
| TraesCS3B01G214400.1 | Wheat | cytosol | 7.69 | 8.9 |
| TraesCS1B01G319400.1 | Wheat | cytosol | 7.69 | 8.72 |
| TraesCS4B01G178200.1 | Wheat | cytosol, plastid, unclear | 7.69 | 8.72 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G336100.2 | EnsemblPlantsGene:TraesCS2B01G336100 | Gene3D:3.40.50.1820 | InterPro:AB_hydrolase | InterPro:FSH_dom | InterPro:IPR029058 |
| PANTHER:PTHR22778 | PANTHER:PTHR22778:SF25 | PFAM:PF03959 | SEG:seg | TMHMM:TMhelix | MapMan:35.2 |
Description
No Description!
Coordinates
chr2B:+:480070325..480071176
Molecular Weight (calculated)
18568.5 Da
IEP (calculated)
7.768
GRAVY (calculated)
0.172
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRRGPFDGL FGFSQVVNYF NLGSISFELR WRHQSSYSYH SDELMSTTVI IIFIIQGALL SAALVGLQQQ GLALNMVPRV KFVMTISGAK IQSPALAAKA
101: YANKINCTSL HFIGDGDFVK AHGEELADSF VDPLVIRHPA GHTVPRLDEK GLQAMLSFLD KIESGLARD
101: YANKINCTSL HFIGDGDFVK AHGEELADSF VDPLVIRHPA GHTVPRLDEK GLQAMLSFLD KIESGLARD
001: MGSEGRSIAR KPRFLCLHGF RTSGEIMKIQ LHKWPKSVID RLDLVFLDAP FPCQGKSDVE GIFDPPYYEW FQFNKEFTEY TNFEKCLEYL EDRMIKLGPF
101: DGLIGFSQVS YLHLKLHQQS LICVLSLKTL NLILQGAILS GGLPGLQAKG IAFQKVPKIK FVIIIGGAKL KSAKLAENAY SSSLETLSLH FLGETDFLKP
201: YGTQLIESYK NPVVVHHPKG HTVPRLDEKS LEKVTAFIDT LEHLVMEEDK NGEENTSKPT K
101: DGLIGFSQVS YLHLKLHQQS LICVLSLKTL NLILQGAILS GGLPGLQAKG IAFQKVPKIK FVIIIGGAKL KSAKLAENAY SSSLETLSLH FLGETDFLKP
201: YGTQLIESYK NPVVVHHPKG HTVPRLDEKS LEKVTAFIDT LEHLVMEEDK NGEENTSKPT K
Arabidopsis Description
INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BE /.../bidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G24380]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.