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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:
  • plastid 4
  • cytosol 3
  • nucleus 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:cytosol
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus, plastid
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc04g074950.2.1 Tomato cytosol, mitochondrion, nucleus 71.6 82.51
KRH72422 Soybean cytosol 57.98 68.66
KRH16812 Soybean cytosol 56.81 67.28
VIT_18s0001g07090.t01 Wine grape mitochondrion 57.98 65.93
Bra013797.1-P Field mustard cytosol 53.31 59.57
CDY03451 Canola cytosol 53.31 59.57
CDY34285 Canola cytosol 52.92 59.13
Os04t0450100-01 Rice cytosol 56.03 58.78
Bra010491.1-P Field mustard cytosol 47.08 57.89
CDY24838 Canola mitochondrion 52.53 57.45
TraesCS2A01G317900.1 Wheat mitochondrion 53.7 57.02
CDY08935 Canola cytosol, mitochondrion 52.14 57.02
Zm00001d003504_P002 Maize plastid 52.92 56.9
KRH48828 Soybean cytosol 11.28 56.86
TraesCS2D01G315600.1 Wheat mitochondrion 53.7 56.56
TraesCS2B01G336000.1 Wheat mitochondrion 53.31 56.15
GSMUA_Achr10P... Banana cytosol 52.53 56.02
GSMUA_Achr7P12840_001 Banana mitochondrion 51.75 55.88
HORVU3Hr1G038300.1 Barley mitochondrion 15.56 54.79
TraesCS2A01G318000.1 Wheat endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 26.85 53.91
HORVU2Hr1G079020.10 Barley cytosol 35.02 53.89
AT4G24380.3 Thale cress mitochondrion 53.7 52.87
HORVU3Hr1G056660.1 Barley mitochondrion 17.12 52.38
KXG26427 Sorghum cytosol 50.97 51.78
GSMUA_Achr3P06720_001 Banana cytosol 46.69 49.38
HORVU2Hr1G026600.1 Barley mitochondrion 18.29 46.08
HORVU2Hr1G063400.1 Barley mitochondrion 18.29 46.08
HORVU5Hr1G035170.1 Barley mitochondrion 17.12 43.14
HORVU7Hr1G079930.1 Barley mitochondrion 16.73 42.57
Solyc05g051430.2.1 Tomato cytosol, extracellular, peroxisome 21.01 41.86
TraesCS2B01G336100.2 Wheat mitochondrion, plastid 26.85 40.83
HORVU2Hr1G078990.11 Barley cytosol, peroxisome 35.41 40.44
HORVU3Hr1G056710.1 Barley mitochondrion 19.84 36.96
Zm00001d003501_P001 Maize plastid 42.8 36.67
Solyc06g060570.2.1 Tomato cytosol 35.8 35.8
Solyc11g010420.1.1 Tomato cytosol, peroxisome, plasma membrane 8.56 9.36
Solyc11g010430.1.1 Tomato cytosol 8.17 9.33
Protein Annotations
EnsemblPlants:Solyc04g074960.2.1EnsemblPlantsGene:Solyc04g074960.2Gene3D:3.40.50.1820InterPro:AB_hydrolaseInterPro:FSH_domInterPro:IPR029058
PANTHER:PTHR22778PANTHER:PTHR22778:SF25PFAM:PF03959SEG:segSUPFAM:SSF53474UniParc:UPI000276586C
UniProt:K4BU34MapMan:35.2::::
Description
No Description!
Coordinates
chr4:+:60843169..60844808
Molecular Weight (calculated)
29052.3 Da
IEP (calculated)
7.535
GRAVY (calculated)
-0.217
Length
257 amino acids
Sequence
(BLAST)
001: MSKQILYYLP KIFSKMYGNT MNMANSAATM AGEGTANANQ RKLPRFLCLH GFRTSGKILK KQIFDKWPIE VVDKLDLVFV DAPFPSQGKS EVEGIFAPPY
101: YEWYQFNKEL NEYENFDNCL DYIQECMIKH GPFDGLLGFS QGAILSGALR GLQDKGVGLT KVRKIKYLII IGGAKMQIKS LAEKAYSPAI TCPSVHFLGE
201: KDFLKPYGME LLESYVDPVV IHHPKGHTIP RFDEKGLESM LSFIEKVQEE ISTSEQV
Best Arabidopsis Sequence Match ( AT4G24380.1 )
(BLAST)
001: MGSEGRSIAR KPRFLCLHGF RTSGEIMKIQ LHKWPKSVID RLDLVFLDAP FPCQGKSDVE GIFDPPYYEW FQFNKEFTEY TNFEKCLEYL EDRMIKLGPF
101: DGLIGFSQGA ILSGGLPGLQ AKGIAFQKVP KIKFVIIIGG AKLKSAKLAE NAYSSSLETL SLHFLGETDF LKPYGTQLIE SYKNPVVVHH PKGHTVPRLD
201: EKSLEKVTAF IDTLEHLVME EDKNGEENTS KPTK
Arabidopsis Description
INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BE /.../bidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G24380]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.