Factsheet for Zm00001d003504_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 20089766
plastid: 22065420

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26427	Sorghum	cytosol	92.47	87.35
Os04t0450100-01	Rice	cytosol	80.75	78.78
TraesCS2A01G317900.1	Wheat	mitochondrion	78.24	77.27
TraesCS2B01G336000.1	Wheat	mitochondrion	78.24	76.64
TraesCS2D01G315600.1	Wheat	mitochondrion	77.82	76.23
HORVU3Hr1G038300.1	Barley	mitochondrion	22.18	72.6
HORVU2Hr1G079020.10	Barley	cytosol	50.63	72.46
GSMUA_Achr10P...	Banana	cytosol	70.71	70.12
GSMUA_Achr7P12840_001	Banana	mitochondrion	69.46	69.75
KRH16812	Soybean	cytosol	63.18	69.59
KRH72422	Soybean	cytosol	61.92	68.2
HORVU3Hr1G056660.1	Barley	mitochondrion	23.43	66.67
VIT_18s0001g07090.t01	Wine grape	mitochondrion	61.92	65.49
Solyc04g074950.2.1	Tomato	cytosol, mitochondrion, nucleus	58.16	62.33
GSMUA_Achr3P06720_001	Banana	cytosol	63.18	62.14
Bra010491.1-P	Field mustard	cytosol	51.88	59.33
CDY24838	Canola	mitochondrion	58.16	59.15
CDY34285	Canola	cytosol	56.9	59.13
CDY03451	Canola	cytosol	56.9	59.13
Bra013797.1-P	Field mustard	cytosol	56.9	59.13
HORVU2Hr1G063400.1	Barley	mitochondrion	25.1	58.82
HORVU2Hr1G026600.1	Barley	mitochondrion	25.1	58.82
CDY08935	Canola	cytosol, mitochondrion	57.74	58.72
HORVU5Hr1G035170.1	Barley	mitochondrion	23.43	54.9
HORVU7Hr1G079930.1	Barley	mitochondrion	23.01	54.46
KRH48828	Soybean	cytosol	11.3	52.94
Solyc04g074960.2.1	Tomato	cytosol, mitochondrion, plastid	56.9	52.92
AT4G24380.3	Thale cress	mitochondrion	57.32	52.49
Zm00001d003501_P001	Maize	plastid	58.16	46.33
HORVU3Hr1G056710.1	Barley	mitochondrion	25.94	44.93
Zm00001d007196_P001	Maize	cytosol	41.42	40.57
Zm00001d022546_P001	Maize	plastid	43.93	26.38
Zm00001d007194_P001	Maize	cytosol	8.37	20.41
Zm00001d010650_P001	Maize	cytosol	9.62	20.35
Zm00001d040323_P001	Maize	cytosol	9.21	19.47

Protein Annotations

EnsemblPlants:Zm00001d003504_P002	EnsemblPlants:Zm00001d003504_T002	EnsemblPlantsGene:Zm00001d003504	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:FSH_dom
InterPro:IPR029058	PANTHER:PTHR22778	PANTHER:PTHR22778:SF25	PFAM:PF03959	ProteinID:ONM17066.1	SUPFAM:SSF53474
UniParc:UPI000844E253	UniProt:A0A1D6E9J3	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr2:-:46187577..46189691

Molecular Weight (calculated)

26692.2 Da

IEP (calculated)

5.663

GRAVY (calculated)

-0.191

Length

239 amino acids

Sequence
(BLAST)

001: MGSLGGDAEP QGARRRPRFL CLHGFRTSGE IMRKQVLGKW PADVTARLDL VFADAPFPAE GKSDVEGIFD PPYYEWFQFD KSFMEYRNFD KCLAYIEELM
101: IKDGPFDGLM GFSQGSILSA ALPGLQEQGL ALTRVPKVKY LIIIGGAKFQ SPTVAGKAYA NKIACPSLHF IGENDFLKVH GEKLIESCVD PFVIRHPKGH
201: TVPRLDDESL VVMHRFLEKI EGEVLEYSSK DVNETEVGM

Best Arabidopsis Sequence Match ( AT4G24380.1 )
(BLAST)

001: MGSEGRSIAR KPRFLCLHGF RTSGEIMKIQ LHKWPKSVID RLDLVFLDAP FPCQGKSDVE GIFDPPYYEW FQFNKEFTEY TNFEKCLEYL EDRMIKLGPF
101: DGLIGFSQGA ILSGGLPGLQ AKGIAFQKVP KIKFVIIIGG AKLKSAKLAE NAYSSSLETL SLHFLGETDF LKPYGTQLIE SYKNPVVVHH PKGHTVPRLD
201: EKSLEKVTAF IDTLEHLVME EDKNGEENTS KPTK

Arabidopsis Description

INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BE /.../bidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G24380]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.