Factsheet for Zm00001d022546_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007196_P001	Maize	cytosol	54.52	88.93
KXG37006	Sorghum	cytosol	84.42	81.16
Os07t0687100-01	Rice	cytosol	50.25	80.97
TraesCS2A01G098200.1	Wheat	cytosol	50.25	80.97
TraesCS2B01G113900.1	Wheat	cytosol	50.0	80.57
TraesCS2D01G097600.1	Wheat	cytosol	49.75	80.16
GSMUA_Achr10P...	Banana	mitochondrion	43.47	71.49
KRG94970	Soybean	cytosol	43.22	64.18
KRH64918	Soybean	cytosol	43.22	64.18
VIT_08s0040g00440.t01	Wine grape	mitochondrion	40.7	62.07
PGSC0003DMT400035884	Potato	mitochondrion	37.94	60.89
Solyc06g060570.2.1	Tomato	cytosol	36.68	56.81
Zm00001d003504_P002	Maize	plastid	26.38	43.93
VIT_11s0016g04330.t01	Wine grape	cytosol, mitochondrion, nucleus	15.08	39.22
Zm00001d003501_P001	Maize	plastid	25.38	33.67
Zm00001d010650_P001	Maize	cytosol	3.77	13.27
Zm00001d040323_P001	Maize	cytosol	3.77	13.27
Zm00001d007194_P001	Maize	cytosol	3.27	13.27

Protein Annotations

Gene3D:1.10.238.10	Gene3D:3.40.50.1820	MapMan:35.1	UniProt:A0A1D6INZ6	InterPro:AB_hydrolase	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:FSH_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
InterPro:IPR002048	InterPro:IPR029058	ProteinID:ONM60985.1	PFAM:PF03959	PFAM:PF13499	PFAM:PF13833
ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR22778	PANTHER:PTHR22778:SF22	SMART:SM00054	SUPFAM:SSF47473
SUPFAM:SSF53474	UniParc:UPI000844ABFB	EnsemblPlantsGene:Zm00001d022546	EnsemblPlants:Zm00001d022546_P001	EnsemblPlants:Zm00001d022546_T001	:

Description

No Description!

Coordinates

chr7:+:179781741..179784624

Molecular Weight (calculated)

44884.3 Da

IEP (calculated)

4.617

GRAVY (calculated)

-0.337

Length

398 amino acids

Sequence
(BLAST)

001: MRSLGQNPTE AELQDMINEV DADGNGTIDF PEFLNLMARK MKDTDSEEEL KEAFRVFDKD QNGFISAAEL RHVMTNLGEK LTDEEVDEMI READVDGDGQ
101: INYEEFVKVM MAKYQLPHAH QVFLRPEVSC VCLNLRCAFG RVELMEQDKR AKVLCLHGFR TSGSFLKKQI SKWHPSIFQQ FEMVFPDGLF PAGGKSEIEG
201: IFPPPYFEWF QFNKEFTEYT NLDECISYLC DYMVKNGPFD GLLGFSQGAT LSALLIGYQA QGKLLSNHPP IKFMVSISGS KFRDPIICDV AYKDPIKVKS
301: VHFIGEKDWL KVPSEELASA FDEPLIIRHP QGHTVPRLGS HSSQISLFDD VSVKQLSEWS SHVLEDLKSA DVPEALDSGK PSDKEAAGAE FTENLVKA

Best Arabidopsis Sequence Match ( AT2G27030.3 )
(BLAST)

001: MADQLTDDQI SEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMARKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVDEMIKEAD VDGDGQINYE EFVKVMMAKR RGKRVMAAKR SSNSAEYKEK NGRRKSHCRI L

Arabidopsis Description

CAM5Calmodulin 5 [Source:UniProtKB/TrEMBL;Acc:F4IVN6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.