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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
  • cytosol 4
  • plasma membrane 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol, plasma membrane
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH73482 Soybean cytosol 100.0 100.0
KRH64911 Soybean cytosol 100.0 100.0
KRH57715 Soybean cytosol 100.0 100.0
KRH14671 Soybean cytosol 100.0 100.0
TraesCS1D01G308100.1 Wheat cytosol, nucleus, plastid, unclear 99.33 99.33
TraesCS1B01G319400.1 Wheat cytosol 99.33 99.33
HORVU0Hr1G001270.1 Barley cytosol 99.33 99.33
HORVU4Hr1G052210.2 Barley cytosol 98.66 98.66
TraesCS2D01G097500.1 Wheat cytosol 98.66 98.66
TraesCS2A01G098100.1 Wheat cytosol 98.66 98.66
OQU86675 Sorghum cytosol 98.66 98.66
TraesCS4B01G178200.1 Wheat cytosol, plastid, unclear 98.66 98.66
CDX67656 Canola cytosol 98.66 98.66
EER94946 Sorghum cytosol 98.66 98.66
CDX70966 Canola cytosol 98.66 98.66
CDX76012 Canola cytosol 98.66 98.66
CDX87950 Canola cytosol 98.66 98.66
CDX88824 Canola cytosol 98.66 98.66
CDY09106 Canola cytosol 98.66 98.66
CDY16599 Canola cytosol 98.66 98.66
CDY22503 Canola cytosol 98.66 98.66
CDY27197 Canola cytosol 98.66 98.66
CDY35428 Canola cytosol 98.66 98.66
CDY47377 Canola cytosol 98.66 98.66
CDY51259 Canola cytosol 98.66 98.66
EES19728 Sorghum cytosol 98.66 98.66
TraesCS4D01G179800.1 Wheat cytosol 97.99 97.99
TraesCS4A01G126700.1 Wheat cytosol 97.99 97.99
HORVU3Hr1G040040.1 Barley cytosol 97.32 97.32
TraesCS3B01G214400.1 Wheat cytosol 95.3 97.26
Zm00001d007194_P001 Maize cytosol 62.42 94.9
Zm00001d010650_P001 Maize cytosol 63.09 83.19
Zm00001d040323_P001 Maize cytosol 62.42 82.3
KRH72422 Soybean cytosol 17.45 11.98
KRH16812 Soybean cytosol 17.45 11.98
KRH64918 Soybean cytosol 12.75 7.09
KRG94970 Soybean cytosol 12.75 7.09
KRH48828 Soybean cytosol 2.01 5.88
KRH69648 Soybean cytosol 3.36 3.12
KRH69644 Soybean cytosol 2.68 1.77
Protein Annotations
Gene3D:1.10.238.10EntrezGene:100791702EntrezGene:100793700EntrezGene:100817351PDB:2RO8MapMan:35.1
EntrezGene:547966EntrezGene:548063EMBL:ACUP02001278EMBL:ACUP02001299EMBL:ACUP02002884EMBL:ACUP02008514
EMBL:ACUP02011823EMBL:BT089094InterPro:EF-hand-dom_pairInterPro:EF_Hand_1_Ca_BSInterPro:EF_hand_domEnsemblPlantsGene:GLYMA_19G068300
GO:GO:0003674GO:GO:0005488GO:GO:0005509GO:GO:0046872InterPro:IPR002048EnsemblPlants:KRG94210
ProteinID:KRG94210ProteinID:KRG94210.1ProteinID:KRH14671.1ProteinID:KRH57715.1ProteinID:KRH64911.1ProteinID:KRH73482.1
EMBL:L01430EMBL:L01432PFAM:PF13499ScanProsite:PS00018PFscan:PS50222PANTHER:PTHR23050
PANTHER:PTHR23050:SF250UniProt:Q6LEG8SMART:SM00054SUPFAM:SSF47473UniParc:UPI00000003A6:
Description
hypothetical protein
Coordinates
chr19:+:20123959..20126811
Molecular Weight (calculated)
16862.6 Da
IEP (calculated)
3.881
GRAVY (calculated)
-0.619
Length
149 amino acids
Sequence
(BLAST)
001: MADQLTDEQI SEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMARKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVDEMIREAD VDGDGQINYE EFVKVMMAK
Best Arabidopsis Sequence Match ( AT3G43810.2 )
(BLAST)
001: MADQLTDDQI SEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMARKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVDEMIREAD VDGDGQINYE EFVKVMMANH VWECASKLIK KRKKKKKKKK KKKTKNAKRN EKELIQHNPS QPESHRVPSR
201: LNLLCHRSHS CSIL
Arabidopsis Description
CAM7Calmodulin 7 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LPJ2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.