Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G197000.1 | Wheat | plasma membrane | 95.67 | 95.67 |
| HORVU7Hr1G058380.2 | Barley | endoplasmic reticulum | 77.0 | 94.29 |
| TraesCS6D01G118200.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 91.67 | 91.67 |
| TraesCS7A01G165200.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 96.0 | 87.8 |
| TraesCS7D01G492900.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 50.33 | 86.29 |
| TraesCS2D01G564600.1 | Wheat | vacuole | 50.0 | 85.71 |
| VIT_00s0629g00020.t01 | Wine grape | mitochondrion | 43.33 | 65.66 |
| ATMG00580.1 | Thale cress | plasma membrane | 88.0 | 53.33 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G089800.1 | EnsemblPlantsGene:TraesCS2D01G089800 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006091 | GO:GO:0006139 |
| GO:GO:0008137 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0042773 | GO:GO:0055114 |
| InterPro:NADH_UbQ_OxRdtase | InterPro:ND/Mrp_mem | PANTHER:PTHR43507 | PANTHER:PTHR43507:SF6 | PFAM:PF00361 | PRINTS:PR01437 |
| SEG:seg | TMHMM:TMhelix | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr2D:+:39608245..39610200
Molecular Weight (calculated)
34100.0 Da
IEP (calculated)
7.365
GRAVY (calculated)
0.878
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEHFWECYF DLSGPILCPV LGSITPLFIP NSSIRPIRLI GLCVSLITFL YPPIPRIQFD PSMAKSQFVE SLRWLSYENI HLYLGIDGLS LFFVILTTFL
101: IPICISVGWS SMRSFGKEYI TSFLIREFLM IAVSCMLDPL LFYVLSESVP IPMLKIKAAY QFFLYTLLGS VFMLLAILLI LLQTGTTDLQ ILLTTEFSER
201: RQILLWIAFF ASFAVKVPMV PVHIWLPEAH VEAPTAGSVI LAGILLKLGT YRFLRFSIPM FPEATLCFTP FIYTLSAIAI IYTSLTTLRQ IDLQKIIAYS
101: IPICISVGWS SMRSFGKEYI TSFLIREFLM IAVSCMLDPL LFYVLSESVP IPMLKIKAAY QFFLYTLLGS VFMLLAILLI LLQTGTTDLQ ILLTTEFSER
201: RQILLWIAFF ASFAVKVPMV PVHIWLPEAH VEAPTAGSVI LAGILLKLGT YRFLRFSIPM FPEATLCFTP FIYTLSAIAI IYTSLTTLRQ IDLQKIIAYS
001: MLEHFCECYS NLSGLILCPV LGSITLLFIP NSRIRPIRLI GLCASLITFL YSPVPRIQFD SSTAKSQFVE SLRWLPYENI NFYLGIDGIS LFFVILTTFL
101: IPICISVGWS GMRSYGKEYI TAFLIREFLM IAVFRMLDLL LFYVFPESVP IPMFIIIGVW GSRQRKIKAA YQFFLYTLLG SLFMLLAILL ILFQTGTTDL
201: QISLTTEFSE RRQIFLWIAS FASFAVKVPM VPVHIWLPEA HVEAPTAGSV ILAGIPLKFG THGFLRFSIP MFPEATLCST PFIYTLSAIA IIYTSLTTSR
301: QIDLKKIIAY SSVAHMNLVT IGMFSPNIQG IGGSILPMLS HGLVPSALFL CVGVLYDRHK TRLVRYYGGL VSTMPNLSTI FFSFTLANMS SPGTSSFIGE
401: FLILVGAFQR NSLVATLAAL GMILGAAYSL WLYNRVVSGN LKPDFLHKFS DSNGREVSIF IPFLVGLVRM GVHPKVFPDC MHTSVSNLVQ HGKFH
101: IPICISVGWS GMRSYGKEYI TAFLIREFLM IAVFRMLDLL LFYVFPESVP IPMFIIIGVW GSRQRKIKAA YQFFLYTLLG SLFMLLAILL ILFQTGTTDL
201: QISLTTEFSE RRQIFLWIAS FASFAVKVPM VPVHIWLPEA HVEAPTAGSV ILAGIPLKFG THGFLRFSIP MFPEATLCST PFIYTLSAIA IIYTSLTTSR
301: QIDLKKIIAY SSVAHMNLVT IGMFSPNIQG IGGSILPMLS HGLVPSALFL CVGVLYDRHK TRLVRYYGGL VSTMPNLSTI FFSFTLANMS SPGTSSFIGE
401: FLILVGAFQR NSLVATLAAL GMILGAAYSL WLYNRVVSGN LKPDFLHKFS DSNGREVSIF IPFLVGLVRM GVHPKVFPDC MHTSVSNLVQ HGKFH
Arabidopsis Description
NAD4NADH-ubiquinone oxidoreductase chain 4 [Source:UniProtKB/TrEMBL;Acc:G1C2U9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.