Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 2
- extracellular 1
- vacuole 2
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G197000.1 | Wheat | plasma membrane | 93.0 | 93.0 |
| TraesCS2D01G089800.1 | Wheat | plasma membrane | 91.67 | 91.67 |
| TraesCS2D01G564600.1 | Wheat | vacuole | 51.67 | 88.57 |
| TraesCS7D01G492900.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 51.33 | 88.0 |
| VIT_00s0629g00020.t01 | Wine grape | mitochondrion | 41.0 | 62.12 |
| BAV58151 | Barley | plasma membrane | 94.0 | 56.97 |
| BAC19875 | Rice | plasma membrane | 93.67 | 56.77 |
| GRMZM5G804358_P02 | Maize | plasma membrane | 93.33 | 56.57 |
| TraesCS2A01G509100.1 | Wheat | plasma membrane | 92.33 | 55.96 |
| ATMG00580.1 | Thale cress | plasma membrane | 84.67 | 51.31 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G118200.1 | EnsemblPlantsGene:TraesCS6D01G118200 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006091 | GO:GO:0006139 |
| GO:GO:0008137 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0042773 | GO:GO:0055114 |
| InterPro:NADH_UbQ_OxRdtase | InterPro:ND/Mrp_mem | PANTHER:PTHR43507 | PANTHER:PTHR43507:SF6 | PFAM:PF00361 | PRINTS:PR01437 |
| SEG:seg | TMHMM:TMhelix | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr6D:-:83952644..83954602
Molecular Weight (calculated)
33804.7 Da
IEP (calculated)
8.040
GRAVY (calculated)
0.891
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEHFCECYF DLSGPILCPM LGSITPLFIP NSSVRLIRLI GLCVSLITFL YPPVPRIQFD PSTAKSQFVE SLRWLPFENI HLYMGIDGLS LFFVILTTFL
101: IPICISVGWS GMRSFGKDYI TAFLIREFLM IAVSCMLDPL LFYVLSESVP IPMLKIKAAY QFFLYTLLGS VFMLLAILLI LLQTGTTNLQ ILLTTEFSER
201: GQILLWIAFF ASFAVKVPMV PVHIWLPEAH VEAPTAGSVI LAGILLKLGT YGFLRFSIPM FPEATLCFTP FIYTLRAIAI IYTSLTTLRS ILRRSLPTPQ
101: IPICISVGWS GMRSFGKDYI TAFLIREFLM IAVSCMLDPL LFYVLSESVP IPMLKIKAAY QFFLYTLLGS VFMLLAILLI LLQTGTTNLQ ILLTTEFSER
201: GQILLWIAFF ASFAVKVPMV PVHIWLPEAH VEAPTAGSVI LAGILLKLGT YGFLRFSIPM FPEATLCFTP FIYTLRAIAI IYTSLTTLRS ILRRSLPTPQ
001: MLEHFCECYS NLSGLILCPV LGSITLLFIP NSRIRPIRLI GLCASLITFL YSPVPRIQFD SSTAKSQFVE SLRWLPYENI NFYLGIDGIS LFFVILTTFL
101: IPICISVGWS GMRSYGKEYI TAFLIREFLM IAVFRMLDLL LFYVFPESVP IPMFIIIGVW GSRQRKIKAA YQFFLYTLLG SLFMLLAILL ILFQTGTTDL
201: QISLTTEFSE RRQIFLWIAS FASFAVKVPM VPVHIWLPEA HVEAPTAGSV ILAGIPLKFG THGFLRFSIP MFPEATLCST PFIYTLSAIA IIYTSLTTSR
301: QIDLKKIIAY SSVAHMNLVT IGMFSPNIQG IGGSILPMLS HGLVPSALFL CVGVLYDRHK TRLVRYYGGL VSTMPNLSTI FFSFTLANMS SPGTSSFIGE
401: FLILVGAFQR NSLVATLAAL GMILGAAYSL WLYNRVVSGN LKPDFLHKFS DSNGREVSIF IPFLVGLVRM GVHPKVFPDC MHTSVSNLVQ HGKFH
101: IPICISVGWS GMRSYGKEYI TAFLIREFLM IAVFRMLDLL LFYVFPESVP IPMFIIIGVW GSRQRKIKAA YQFFLYTLLG SLFMLLAILL ILFQTGTTDL
201: QISLTTEFSE RRQIFLWIAS FASFAVKVPM VPVHIWLPEA HVEAPTAGSV ILAGIPLKFG THGFLRFSIP MFPEATLCST PFIYTLSAIA IIYTSLTTSR
301: QIDLKKIIAY SSVAHMNLVT IGMFSPNIQG IGGSILPMLS HGLVPSALFL CVGVLYDRHK TRLVRYYGGL VSTMPNLSTI FFSFTLANMS SPGTSSFIGE
401: FLILVGAFQR NSLVATLAAL GMILGAAYSL WLYNRVVSGN LKPDFLHKFS DSNGREVSIF IPFLVGLVRM GVHPKVFPDC MHTSVSNLVQ HGKFH
Arabidopsis Description
NAD4NADH-ubiquinone oxidoreductase chain 4 [Source:UniProtKB/TrEMBL;Acc:G1C2U9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.