CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 4
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
BAC19875	Rice	plasma membrane	99.39	99.39
GRMZM5G804358_P02	Maize	plasma membrane	99.39	99.39
TraesCS2A01G509100.1	Wheat	plasma membrane	98.59	98.59
HORVU7Hr1G058380.2	Barley	endoplasmic reticulum	47.88	96.73
TraesCS6D01G118200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	56.97	94.0
ATMG00580.1	Thale cress	plasma membrane	92.53	92.53
HORVU0Hr1G033670.1	Barley	vacuole	31.72	91.81
HORVU6Hr1G085230.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	29.29	82.86
HORVU5Hr1G079270.1	Barley	extracellular	14.95	80.43
HORVU5Hr1G079410.1	Barley	endoplasmic reticulum	28.28	78.21
HORVU2Hr1G061070.1	Barley	extracellular, vacuole	7.88	76.47
VIT_00s0629g00020.t01	Wine grape	mitochondrion	29.7	74.24
HORVU6Hr1G044660.2	Barley	endoplasmic reticulum	26.06	72.07
HORVU5Hr1G079280.1	Barley	extracellular	8.89	61.11

Protein Annotations

MapMan:2.4.1.3.4	GO:A0A1C9ZQ72	UniProt:A0A1C9ZQ72	ENA:AP017301.1:CDS:join(353158..353618,354646..355160,358606..359028,360684..360772)	EnsemblPlants:BAV58151	ProteinID:BAV58151
ProteinID:BAV58151.1	EnsemblPlantsGene:EPlHVUG00000039867	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006091	GO:GO:0006139	GO:GO:0008137
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0042773	GO:GO:0055114	InterPro:NADH_Q_OxRdtase_chainM/4	InterPro:NADH_UbQ_OxRdtase	InterPro:ND/Mrp_mem	PFAM:PF00361
PRINTS:PR01437	PANTHER:PTHR43507	PANTHER:PTHR43507:SF6	TIGRFAMs:TIGR01972	TMHMM:TMhelix	UniParc:UPI00005DB4C9
SEG:seg	:	:	:	:	:

Description

nad4NADH dehydrogenase subunit 4

Coordinates

chrMt:+:353158..360772

Molecular Weight (calculated)

55324.4 Da

IEP (calculated)

8.861

GRAVY (calculated)

0.781

Length

495 amino acids

Sequence
(BLAST)

001: MLEHFCECYF DLSGPILCPV LGSITPLFIP NSSIRPIRLI GLCVSLITFL YPPVPRIQFD PSTAKSQFVE SLRWLPYENI HLYMGIDGLS LFFVILTTFL
101: IPICISVGWS GMRSFGKEYI TAFLIREFLM IAVSCMLDPL LFYVLSESVP IPMFIIIGVW GSRQRKIKAA YQFFLYTLLG SVFMLLAILL ILLQTGTTDL
201: QILLTTEFSE RRQILLWIAF FASFAVKVPM VPVHIWLPEA HVEAPTAGSV ILAGILLKLG TYGFLRFSIP MFPEATLCFT PFIYTLSAIA IIYTSLTTLR
301: QIDLKKIIAY SSVAHMNLVT IGMFSPNIQG IGGSILLMLS HGLVSSALFL CVGVLYDRHK TRLVRYYGGL VSTMPNFSTI FFFFTLANMS LPGTSSFIGE
401: FLILVGAFQR NSLVATLAAL GMILGAAYSL WLYNRVVSGN LKPDFLYKFS DLNGREVSIF LPFLVGVVRM GVHPKVFPDC MHTSVSNLVQ HGKFH

Best Arabidopsis Sequence Match ( ATMG00580.1 )
(BLAST)

001: MLEHFCECYS NLSGLILCPV LGSITLLFIP NSRIRPIRLI GLCASLITFL YSPVPRIQFD SSTAKSQFVE SLRWLPYENI NFYLGIDGIS LFFVILTTFL
101: IPICISVGWS GMRSYGKEYI TAFLIREFLM IAVFRMLDLL LFYVFPESVP IPMFIIIGVW GSRQRKIKAA YQFFLYTLLG SLFMLLAILL ILFQTGTTDL
201: QISLTTEFSE RRQIFLWIAS FASFAVKVPM VPVHIWLPEA HVEAPTAGSV ILAGIPLKFG THGFLRFSIP MFPEATLCST PFIYTLSAIA IIYTSLTTSR
301: QIDLKKIIAY SSVAHMNLVT IGMFSPNIQG IGGSILPMLS HGLVPSALFL CVGVLYDRHK TRLVRYYGGL VSTMPNLSTI FFSFTLANMS SPGTSSFIGE
401: FLILVGAFQR NSLVATLAAL GMILGAAYSL WLYNRVVSGN LKPDFLHKFS DSNGREVSIF IPFLVGLVRM GVHPKVFPDC MHTSVSNLVQ HGKFH

Arabidopsis Description

NAD4NADH-ubiquinone oxidoreductase chain 4 [Source:UniProtKB/TrEMBL;Acc:G1C2U9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.