Factsheet for TraesCS2A01G509100.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 4
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
BAV58151	Barley	plasma membrane	98.59	98.59
BAC19875	Rice	plasma membrane	97.98	97.98
GRMZM5G804358_P02	Maize	plasma membrane	97.98	97.98
TraesCS7A01G165200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	62.22	93.9
TraesCS6D01G118200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	55.96	92.33
ATMG00580.1	Thale cress	plasma membrane	91.11	91.11
TraesCS5A01G133400.1	Wheat	cytosol, endoplasmic reticulum, vacuole	31.52	89.14
TraesCS5A01G020600.1	Wheat	vacuole	31.31	88.57
TraesCS7A01G479400.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	31.11	88.0
TraesCS4A01G069700.1	Wheat	vacuole	30.91	87.43
TraesCS7A01G164200.1	Wheat	vacuole	30.91	87.43
TraesCS4A01G171000.1	Wheat	vacuole	30.71	86.86
TraesCS6A01G202500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	30.51	86.78
TraesCS7A01G237700.1	Wheat	endoplasmic reticulum	30.51	86.29
TraesCS1A01G184200.1	Wheat	endoplasmic reticulum	30.51	83.43
VIT_00s0629g00020.t01	Wine grape	mitochondrion	28.89	72.22

Protein Annotations

EnsemblPlants:TraesCS2A01G509100.1	EnsemblPlantsGene:TraesCS2A01G509100	GO:GO:0003674	GO:GO:0003824	GO:GO:0006091	GO:GO:0006139
GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0042773	GO:GO:0055114
InterPro:NADH_Q_OxRdtase_chainM/4	InterPro:NADH_UbQ_OxRdtase	InterPro:ND/Mrp_mem	PANTHER:PTHR43507	PANTHER:PTHR43507:SF6	PFAM:PF00361
PRINTS:PR01437	SEG:seg	TIGRFAMs:TIGR01972	TMHMM:TMhelix	MapMan:2.4.1.3.4	:

Description

No Description!

Coordinates

chr2A:+:735173801..735181370

Molecular Weight (calculated)

55486.5 Da

IEP (calculated)

8.651

GRAVY (calculated)

0.784

Length

495 amino acids

Sequence
(BLAST)

001: MLEHFCECYF DLSGPILCPV LGSITPLFIS NSSIRPIRLI GLCVSLITFL YPPVPRIQFD PSTAKSQFVE SLRWLPYENI HLYMGIDGLS LFFVILTTFL
101: IPICISVGWS GMRSFGKEYI TAFLIREFLM IAMSCMLDPL LFYVLSESVP IPMFIIIGVW GSRQRKINAA YHFFLYTLLG SVFMLLAILL ILLQTGTTDL
201: QILLTTEFSE RRQILLWIAF FASFAVKVPM VPVHIWLPEA HVEAPTAGSV ILAGILLKLG TYGFLRFSIP MFPEATLCFT HFIYTLSAIA IIYTSLTTLR
301: QIDLKKIIAY SSVAHMNLVT IGMFSWNIQG IGGSILLMLS HGLVSSALFL CVGVLYDRHK TRLVRYYGGL VSTMPNFSTI FFFFTLANMS LPGTSCFIGE
401: FLILVGAFQR NSLVATLAAL GMILGAAYSL WLYNRVVSGN LKPDFLYKFS DLNGREVSIF LPFLVGVVRM GVHPKVFPDC MHTSVSNLVQ HGKFH

Best Arabidopsis Sequence Match ( ATMG00580.1 )
(BLAST)

001: MLEHFCECYS NLSGLILCPV LGSITLLFIP NSRIRPIRLI GLCASLITFL YSPVPRIQFD SSTAKSQFVE SLRWLPYENI NFYLGIDGIS LFFVILTTFL
101: IPICISVGWS GMRSYGKEYI TAFLIREFLM IAVFRMLDLL LFYVFPESVP IPMFIIIGVW GSRQRKIKAA YQFFLYTLLG SLFMLLAILL ILFQTGTTDL
201: QISLTTEFSE RRQIFLWIAS FASFAVKVPM VPVHIWLPEA HVEAPTAGSV ILAGIPLKFG THGFLRFSIP MFPEATLCST PFIYTLSAIA IIYTSLTTSR
301: QIDLKKIIAY SSVAHMNLVT IGMFSPNIQG IGGSILPMLS HGLVPSALFL CVGVLYDRHK TRLVRYYGGL VSTMPNLSTI FFSFTLANMS SPGTSSFIGE
401: FLILVGAFQR NSLVATLAAL GMILGAAYSL WLYNRVVSGN LKPDFLHKFS DSNGREVSIF IPFLVGLVRM GVHPKVFPDC MHTSVSNLVQ HGKFH

Arabidopsis Description

NAD4NADH-ubiquinone oxidoreductase chain 4 [Source:UniProtKB/TrEMBL;Acc:G1C2U9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.