Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 5
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| BAV58151 | Barley | plasma membrane | 92.53 | 92.53 |
| BAC19875 | Rice | plasma membrane | 92.32 | 92.32 |
| GRMZM5G804358_P02 | Maize | plasma membrane | 91.92 | 91.92 |
| TraesCS2A01G509100.1 | Wheat | plasma membrane | 91.11 | 91.11 |
| TraesCS5B01G572900.1 | Wheat | plasma membrane | 89.49 | 90.59 |
| CDY45494 | Canola | endoplasmic reticulum, extracellular, plastid, vacuole | 13.54 | 89.33 |
| TraesCS3D01G197000.1 | Wheat | plasma membrane | 53.94 | 89.0 |
| TraesCS2D01G089800.1 | Wheat | plasma membrane | 53.33 | 88.0 |
| HORVU7Hr1G058380.2 | Barley | endoplasmic reticulum | 43.23 | 87.35 |
| TraesCS7A01G165200.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 57.58 | 86.89 |
| TraesCS1B01G189000.1 | Wheat | plasma membrane | 56.16 | 86.07 |
| TraesCS6D01G118200.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 51.31 | 84.67 |
| HORVU0Hr1G033670.1 | Barley | vacuole | 27.88 | 80.7 |
| TraesCS5A01G133400.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 28.08 | 79.43 |
| TraesCS7D01G492900.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 28.08 | 79.43 |
| TraesCS7B01G488700.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 28.08 | 79.43 |
| TraesCS5A01G020600.1 | Wheat | vacuole | 27.88 | 78.86 |
| TraesCS7B01G488300.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 27.88 | 78.86 |
| TraesCS2D01G564600.1 | Wheat | vacuole | 27.88 | 78.86 |
| TraesCS3B01G189600.1 | Wheat | vacuole | 27.68 | 78.29 |
| TraesCS7A01G479400.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 27.68 | 78.29 |
| TraesCS4A01G069700.1 | Wheat | vacuole | 27.47 | 77.71 |
| TraesCS4A01G171000.1 | Wheat | vacuole | 27.47 | 77.71 |
| TraesCS7A01G164200.1 | Wheat | vacuole | 27.47 | 77.71 |
| TraesCS6A01G202500.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 27.27 | 77.59 |
| TraesCS3B01G363700.1 | Wheat | vacuole | 27.27 | 77.14 |
| TraesCS7A01G237700.1 | Wheat | endoplasmic reticulum | 27.27 | 77.14 |
| TraesCS1B01G068900.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 27.07 | 76.57 |
| VIT_00s0629g00020.t01 | Wine grape | mitochondrion | 30.51 | 76.26 |
| Solyc10g061990.1.1 | Tomato | plasma membrane | 29.09 | 75.39 |
| TraesCS1A01G184200.1 | Wheat | endoplasmic reticulum | 27.07 | 74.03 |
| HORVU6Hr1G085230.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 25.45 | 72.0 |
| OQU86913 | Sorghum | extracellular | 13.33 | 71.74 |
| HORVU5Hr1G079270.1 | Barley | extracellular | 13.13 | 70.65 |
| CDY45493 | Canola | extracellular | 9.09 | 70.31 |
| KRG62078 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 34.14 | 68.98 |
| HORVU5Hr1G079280.1 | Barley | extracellular | 7.68 | 52.78 |
Protein Annotations
| MapMan:2.4.1.3.4 | EntrezGene:814596 | ProteinID:AEK01259.1 | ProteinID:AEK01288.1 | ArrayExpress:ATMG00580 | EnsemblPlantsGene:ATMG00580 |
| RefSeq:ATMG00580 | TAIR:ATMG00580 | RefSeq:ATMG00580-TAIR-G | EnsemblPlants:ATMG00580.1 | TAIR:ATMG00580.1 | UniProt:G1C2U9 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005739 | GO:GO:0005743 | GO:GO:0006091 | GO:GO:0006139 | GO:GO:0008137 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016491 | GO:GO:0042773 |
| GO:GO:0055114 | GO:GO:0070469 | Symbol:NAD4 | InterPro:NADH_Q_OxRdtase_chainM/4 | InterPro:NADH_UbQ_OxRdtase | InterPro:ND/Mrp_mem |
| RefSeq:NP_085518.1 | PFAM:PF00361 | PRINTS:PR01437 | PANTHER:PTHR43507 | PANTHER:PTHR43507:SF6 | TIGRFAMs:TIGR01972 |
| TMHMM:TMhelix | UniParc:UPI00000A9AD6 | SEG:seg | : | : | : |
Description
NAD4NADH-ubiquinone oxidoreductase chain 4 [Source:UniProtKB/TrEMBL;Acc:G1C2U9]
Coordinates
chrMt:+:161693..169674
Molecular Weight (calculated)
55235.9 Da
IEP (calculated)
9.366
GRAVY (calculated)
0.687
Length
495 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEHFCECYS NLSGLILCPV LGSITLLFIP NSRIRPIRLI GLCASLITFL YSPVPRIQFD SSTAKSQFVE SLRWLPYENI NFYLGIDGIS LFFVILTTFL
101: IPICISVGWS GMRSYGKEYI TAFLIREFLM IAVFRMLDLL LFYVFPESVP IPMFIIIGVW GSRQRKIKAA YQFFLYTLLG SLFMLLAILL ILFQTGTTDL
201: QISLTTEFSE RRQIFLWIAS FASFAVKVPM VPVHIWLPEA HVEAPTAGSV ILAGIPLKFG THGFLRFSIP MFPEATLCST PFIYTLSAIA IIYTSLTTSR
301: QIDLKKIIAY SSVAHMNLVT IGMFSPNIQG IGGSILPMLS HGLVPSALFL CVGVLYDRHK TRLVRYYGGL VSTMPNLSTI FFSFTLANMS SPGTSSFIGE
401: FLILVGAFQR NSLVATLAAL GMILGAAYSL WLYNRVVSGN LKPDFLHKFS DSNGREVSIF IPFLVGLVRM GVHPKVFPDC MHTSVSNLVQ HGKFH
101: IPICISVGWS GMRSYGKEYI TAFLIREFLM IAVFRMLDLL LFYVFPESVP IPMFIIIGVW GSRQRKIKAA YQFFLYTLLG SLFMLLAILL ILFQTGTTDL
201: QISLTTEFSE RRQIFLWIAS FASFAVKVPM VPVHIWLPEA HVEAPTAGSV ILAGIPLKFG THGFLRFSIP MFPEATLCST PFIYTLSAIA IIYTSLTTSR
301: QIDLKKIIAY SSVAHMNLVT IGMFSPNIQG IGGSILPMLS HGLVPSALFL CVGVLYDRHK TRLVRYYGGL VSTMPNLSTI FFSFTLANMS SPGTSSFIGE
401: FLILVGAFQR NSLVATLAAL GMILGAAYSL WLYNRVVSGN LKPDFLHKFS DSNGREVSIF IPFLVGLVRM GVHPKVFPDC MHTSVSNLVQ HGKFH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.