Factsheet for VIT_00s0629g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G079410.1	Barley	endoplasmic reticulum	68.69	75.98
HORVU6Hr1G044660.2	Barley	endoplasmic reticulum	64.65	71.51
HORVU2Hr1G061070.1	Barley	extracellular, vacuole	17.68	68.63
TraesCS1B01G189000.1	Wheat	plasma membrane	75.25	46.13
TraesCS7A01G165200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	73.74	44.51
TraesCS3D01G197000.1	Wheat	plasma membrane	66.67	44.0
TraesCS2D01G089800.1	Wheat	plasma membrane	65.66	43.33
TraesCS6D01G118200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	62.12	41.0
HORVU7Hr1G058380.2	Barley	endoplasmic reticulum	41.92	33.88
ATMG00580.1	Thale cress	plasma membrane	76.26	30.51
BAC19875	Rice	plasma membrane	74.24	29.7
GRMZM5G804358_P02	Maize	plasma membrane	74.24	29.7
BAV58151	Barley	plasma membrane	74.24	29.7
TraesCS5B01G572900.1	Wheat	plasma membrane	73.23	29.65
KRG62078	Soybean	endoplasmic reticulum, extracellular, plasma membrane	36.36	29.39
TraesCS2A01G509100.1	Wheat	plasma membrane	72.22	28.89
Solyc10g061990.1.1	Tomato	plasma membrane	17.17	17.8
OQU86913	Sorghum	extracellular	4.04	8.7
HORVU5Hr1G079280.1	Barley	extracellular	3.03	8.33
CDY45493	Canola	extracellular	2.53	7.81
HORVU5Hr1G079270.1	Barley	extracellular	3.54	7.61
KRH33086	Soybean	plasma membrane	9.09	7.5
TraesCS1A01G184200.1	Wheat	endoplasmic reticulum	5.56	6.08
TraesCS6A01G202500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	4.04	4.6
TraesCS7B01G488300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	4.04	4.57
TraesCS5A01G133400.1	Wheat	cytosol, endoplasmic reticulum, vacuole	4.04	4.57
TraesCS7A01G479400.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	4.04	4.57
TraesCS3B01G363700.1	Wheat	vacuole	4.04	4.57
TraesCS7B01G488700.1	Wheat	cytosol, endoplasmic reticulum, vacuole	4.04	4.57
TraesCS7D01G492900.1	Wheat	cytosol, endoplasmic reticulum, vacuole	4.04	4.57
TraesCS5A01G020600.1	Wheat	vacuole	4.04	4.57
TraesCS4A01G171000.1	Wheat	vacuole	4.04	4.57
TraesCS4A01G069700.1	Wheat	vacuole	4.04	4.57
TraesCS3B01G189600.1	Wheat	vacuole	4.04	4.57
TraesCS2D01G564600.1	Wheat	vacuole	4.04	4.57
TraesCS1B01G068900.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	4.04	4.57
HORVU0Hr1G033670.1	Barley	vacuole	3.54	4.09
TraesCS7A01G164200.1	Wheat	vacuole	3.54	4.0
HORVU6Hr1G085230.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	3.54	4.0
TraesCS7A01G237700.1	Wheat	endoplasmic reticulum	3.03	3.43
Solyc10g045750.1.1	Tomato	extracellular	0.51	1.03
CDY45494	Canola	endoplasmic reticulum, extracellular, plastid, vacuole	0.0	0.0

Protein Annotations

MapMan:35.1	ProteinID:CCB50178	ProteinID:CCB50178.1	UniProt:F6HD83	EMBL:FN595561	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006091	GO:GO:0006139	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0042773	GO:GO:0055114	InterPro:NADH_UbQ_OxRdtase
InterPro:ND/Mrp_mem	PFAM:PF00361	PRINTS:PR01437	PANTHER:PTHR43507	PANTHER:PTHR43507:SF6	TMHMM:TMhelix
UniParc:UPI000210A70C	ArrayExpress:VIT_00s0629g00020	EnsemblPlantsGene:VIT_00s0629g00020	EnsemblPlants:VIT_00s0629g00020.t01	SEG:seg	:

Description

No Description!

Coordinates

chrUn:-:33177876..33183469

Molecular Weight (calculated)

21917.2 Da

IEP (calculated)

10.856

GRAVY (calculated)

0.374

Length

198 amino acids

Sequence
(BLAST)

001: GSGVGSRQRK IKAAYQFFLY TLLGSVFMLL AILLILLQTG TTDSQISLTT EFSERRQIFL WIASFASFAV KVPMVPVHIW LPEAHVKAPT AESVILAGIP
101: LKLGTHGFLR FSIPMFPKAT LRSTPFIYTP RAIAIIYTSS TTSRQIDLKK IIAYSPVAHM NLVTIGMFSR AAAVRSPILS YGHTRPKHVC RACDPSTY

Best Arabidopsis Sequence Match ( ATMG00580.1 )
(BLAST)

001: MLEHFCECYS NLSGLILCPV LGSITLLFIP NSRIRPIRLI GLCASLITFL YSPVPRIQFD SSTAKSQFVE SLRWLPYENI NFYLGIDGIS LFFVILTTFL
101: IPICISVGWS GMRSYGKEYI TAFLIREFLM IAVFRMLDLL LFYVFPESVP IPMFIIIGVW GSRQRKIKAA YQFFLYTLLG SLFMLLAILL ILFQTGTTDL
201: QISLTTEFSE RRQIFLWIAS FASFAVKVPM VPVHIWLPEA HVEAPTAGSV ILAGIPLKFG THGFLRFSIP MFPEATLCST PFIYTLSAIA IIYTSLTTSR
301: QIDLKKIIAY SSVAHMNLVT IGMFSPNIQG IGGSILPMLS HGLVPSALFL CVGVLYDRHK TRLVRYYGGL VSTMPNLSTI FFSFTLANMS SPGTSSFIGE
401: FLILVGAFQR NSLVATLAAL GMILGAAYSL WLYNRVVSGN LKPDFLHKFS DSNGREVSIF IPFLVGLVRM GVHPKVFPDC MHTSVSNLVQ HGKFH

Arabidopsis Description

NAD4NADH-ubiquinone oxidoreductase chain 4 [Source:UniProtKB/TrEMBL;Acc:G1C2U9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.