Factsheet for GRMZM5G804358_P02

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
BAV58151	Barley	plasma membrane	99.39	99.39
BAC19875	Rice	plasma membrane	98.79	98.79
TraesCS2A01G509100.1	Wheat	plasma membrane	97.98	97.98
TraesCS6D01G118200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	56.57	93.33
ATMG00580.1	Thale cress	plasma membrane	91.92	91.92
OQU86913	Sorghum	extracellular	15.15	81.52
CDY45494	Canola	endoplasmic reticulum, extracellular, plastid, vacuole	11.92	78.67
VIT_00s0629g00020.t01	Wine grape	mitochondrion	29.7	74.24
CDY45493	Canola	extracellular	8.08	62.5
KRH33086	Soybean	plasma membrane	28.69	59.17
Solyc10g045750.1.1	Tomato	extracellular	10.51	53.61

Protein Annotations

MapMan:2.4.1.3.4	EntrezGene:4055888	ProteinID:AAR91196.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006091	GO:GO:0006139
GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0042773	GO:GO:0055114	EnsemblPlantsGene:GRMZM5G804358	EnsemblPlants:GRMZM5G804358_P02	EnsemblPlants:GRMZM5G804358_T02
InterPro:NADH_Q_OxRdtase_chainM/4	InterPro:NADH_UbQ_OxRdtase	InterPro:ND/Mrp_mem	PFAM:PF00361	PRINTS:PR01437	PANTHER:PTHR43507
PANTHER:PTHR43507:SF6	UniProt:Q6R9L4	TIGRFAMs:TIGR01972	TMHMM:TMhelix	UniParc:UPI0000233EF7	SEG:seg

Description

NADH-ubiquinone oxidoreductase chain 4 [Source:UniProtKB/TrEMBL;Acc:Q6R9L4]

Coordinates

chrMt:-:76132..84976

Molecular Weight (calculated)

55263.2 Da

IEP (calculated)

8.819

GRAVY (calculated)

0.779

Length

495 amino acids

Sequence
(BLAST)

001: MLEHFSECYF DLSGPILCPV LGSITPLFIP NSSIRPIRLI GLCVSLITFL YPPVPRIQFD PSTANSQFVE SLRWLPYENI HLYMGIDGLS LFFVILTTFL
101: IPICISVGWS GMRSFGKEYI TAFLIREFLM IAVSCMLDPL LFYVLSESVP IPMFIIIGVW GSRQRKIKAA YQFFLYTLLG SVFMLLAILL ILLQTGTTDL
201: QILLTTEFSE RRQILLWIAF FASFAVKVPM VPVHIWLPEA HVEAPTAGSV ILAGILLKLG TYGFLRFSIP MFPEATLCFT PFIYTLSAIA IIYTSLTTLR
301: QIDLKKIIAY SSVAHMNLVT IGMFSPNIPG IGGSILLMLS HGLVSSALFL CVGVLYDRHK TRLVRYYGGL VSTMPNFSTI FFFFTLANMS LPGTSSFIGE
401: FLILVGAFQR NSLVATLAAL GMILGAAYSL WLYNRVVSGN LKPDFLYKFS DLNGREVSIF LPFLVGVVRM GVHPKVFPDC MHTSVSNLVQ HGKFH

Best Arabidopsis Sequence Match ( ATMG00580.1 )
(BLAST)

001: MLEHFCECYS NLSGLILCPV LGSITLLFIP NSRIRPIRLI GLCASLITFL YSPVPRIQFD SSTAKSQFVE SLRWLPYENI NFYLGIDGIS LFFVILTTFL
101: IPICISVGWS GMRSYGKEYI TAFLIREFLM IAVFRMLDLL LFYVFPESVP IPMFIIIGVW GSRQRKIKAA YQFFLYTLLG SLFMLLAILL ILFQTGTTDL
201: QISLTTEFSE RRQIFLWIAS FASFAVKVPM VPVHIWLPEA HVEAPTAGSV ILAGIPLKFG THGFLRFSIP MFPEATLCST PFIYTLSAIA IIYTSLTTSR
301: QIDLKKIIAY SSVAHMNLVT IGMFSPNIQG IGGSILPMLS HGLVPSALFL CVGVLYDRHK TRLVRYYGGL VSTMPNLSTI FFSFTLANMS SPGTSSFIGE
401: FLILVGAFQR NSLVATLAAL GMILGAAYSL WLYNRVVSGN LKPDFLHKFS DSNGREVSIF IPFLVGLVRM GVHPKVFPDC MHTSVSNLVQ HGKFH

Arabidopsis Description

NAD4NADH-ubiquinone oxidoreductase chain 4 [Source:UniProtKB/TrEMBL;Acc:G1C2U9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.