Factsheet for TraesCS6A01G202500.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

nucleus 1
extracellular 2
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G479400.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	95.98	95.43
TraesCS5A01G133400.1	Wheat	cytosol, endoplasmic reticulum, vacuole	95.98	95.43
TraesCS5A01G020600.1	Wheat	vacuole	95.4	94.86
OQU86913	Sorghum	extracellular	50.0	94.57
TraesCS3B01G189600.1	Wheat	vacuole	94.83	94.29
TraesCS7A01G164200.1	Wheat	vacuole	94.25	93.71
TraesCS4A01G069700.1	Wheat	vacuole	94.25	93.71
TraesCS4A01G171000.1	Wheat	vacuole	93.68	93.14
TraesCS7A01G237700.1	Wheat	endoplasmic reticulum	93.1	92.57
TraesCS3B01G363700.1	Wheat	vacuole	92.53	92.0
TraesCS1B01G068900.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	91.95	91.43
HORVU6Hr1G085230.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	87.93	87.43
TraesCS1A01G184200.1	Wheat	endoplasmic reticulum	89.66	86.19
CDY45494	Canola	endoplasmic reticulum, extracellular, plastid, vacuole	35.06	81.33
CDY45493	Canola	extracellular	29.31	79.69
KRH33086	Soybean	plasma membrane	79.89	57.92
Solyc10g045750.1.1	Tomato	extracellular	32.18	57.73
TraesCS7A01G165200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	87.36	46.34
TraesCS2A01G509100.1	Wheat	plasma membrane	86.78	30.51
ATMG00580.1	Thale cress	plasma membrane	77.59	27.27
VIT_00s0629g00020.t01	Wine grape	mitochondrion	4.6	4.04

Protein Annotations

EnsemblPlants:TraesCS6A01G202500.1	EnsemblPlantsGene:TraesCS6A01G202500	GO:GO:0003674	GO:GO:0003824	GO:GO:0006091	GO:GO:0006139
GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0042773	GO:GO:0055114
InterPro:NADH_UbQ_OxRdtase	PANTHER:PTHR43507	PANTHER:PTHR43507:SF6	TMHMM:TMhelix	MapMan:35.1	:

Description

No Description!

Coordinates

chr6A:+:338461218..338475992

Molecular Weight (calculated)

19743.1 Da

IEP (calculated)

6.221

GRAVY (calculated)

0.955

Length

174 amino acids

Sequence
(BLAST)

001: MLEHFCECYF DLSGPILCPV LGSITPLFIP NSSIRPIRLI GLCVSLITFL YPPVPRIQFD LSMAKSQFVE GLRWLPYENI HLYMGIDSLS LFFVILTTFL
101: IPIFISVGWS GMRCFGKEYI TAFLIREFLM IAVSCMLDPL LFYVLSESVP IPMLCGAEHL LFAGIKLFLC RGLL

Best Arabidopsis Sequence Match ( ATMG00580.1 )
(BLAST)

001: MLEHFCECYS NLSGLILCPV LGSITLLFIP NSRIRPIRLI GLCASLITFL YSPVPRIQFD SSTAKSQFVE SLRWLPYENI NFYLGIDGIS LFFVILTTFL
101: IPICISVGWS GMRSYGKEYI TAFLIREFLM IAVFRMLDLL LFYVFPESVP IPMFIIIGVW GSRQRKIKAA YQFFLYTLLG SLFMLLAILL ILFQTGTTDL
201: QISLTTEFSE RRQIFLWIAS FASFAVKVPM VPVHIWLPEA HVEAPTAGSV ILAGIPLKFG THGFLRFSIP MFPEATLCST PFIYTLSAIA IIYTSLTTSR
301: QIDLKKIIAY SSVAHMNLVT IGMFSPNIQG IGGSILPMLS HGLVPSALFL CVGVLYDRHK TRLVRYYGGL VSTMPNLSTI FFSFTLANMS SPGTSSFIGE
401: FLILVGAFQR NSLVATLAAL GMILGAAYSL WLYNRVVSGN LKPDFLHKFS DSNGREVSIF IPFLVGLVRM GVHPKVFPDC MHTSVSNLVQ HGKFH

Arabidopsis Description

NAD4NADH-ubiquinone oxidoreductase chain 4 [Source:UniProtKB/TrEMBL;Acc:G1C2U9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.