Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G517300.1 | Wheat | cytosol | 99.08 | 99.08 |
| TraesCS3A01G509800.1 | Wheat | cytosol | 90.83 | 90.41 |
| TraesCS3B01G578400.1 | Wheat | cytosol | 88.53 | 87.33 |
| HORVU3Hr1G112020.2 | Barley | cytosol | 83.03 | 81.53 |
| TraesCS3A01G510100.1 | Wheat | cytosol | 73.85 | 73.52 |
| TraesCS3A01G510000.1 | Wheat | cytosol | 47.25 | 63.98 |
| TraesCS3A01G510200.1 | Wheat | cytosol | 61.93 | 58.7 |
| Os01t0963600-01 | Rice | extracellular | 43.12 | 51.65 |
| Zm00001d011813_P001 | Maize | extracellular | 40.37 | 48.62 |
| KXG34187 | Sorghum | cytosol, mitochondrion, nucleus | 37.61 | 44.09 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G509900.1 | EnsemblPlantsGene:TraesCS3A01G509900 | GO:GO:0006950 | GO:GO:0008150 | InterPro:ABA_WDS | PANTHER:PTHR33801 |
| PANTHER:PTHR33801:SF8 | PFAM:PF02496 | SEG:seg | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr3A:-:730207889..730208652
Molecular Weight (calculated)
23214.3 Da
IEP (calculated)
6.738
GRAVY (calculated)
-0.929
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAYYNGGRP MSYSNTEESF DGGRTVYSTT TEECYDAGKL GHGTGYGHGQ SHGNGGTNMY FNNTGVDSSM YGHGSGGGRT VYTTTTDECF DSVRPGYGQG
101: HGYGQNNGGT MSYTTTTESF GGGDQGQGYY KKEVTQHKNM ERVGEAGALA AGAFALYEGY EAKKDPAHAR KHQIEAGLAG VAAAGAGGYA YHEHREQKQP
201: SYGGKQVYRM PVHNSYCN
101: HGYGQNNGGT MSYTTTTESF GGGDQGQGYY KKEVTQHKNM ERVGEAGALA AGAFALYEGY EAKKDPAHAR KHQIEAGLAG VAAAGAGGYA YHEHREQKQP
201: SYGGKQVYRM PVHNSYCN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.