Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G510100.1 | Wheat | cytosol | 75.65 | 79.45 |
| TraesCS3A01G510000.1 | Wheat | cytosol | 49.57 | 70.81 |
| HORVU3Hr1G112020.2 | Barley | cytosol | 60.0 | 62.16 |
| TraesCS3A01G509900.1 | Wheat | cytosol | 58.7 | 61.93 |
| TraesCS3A01G509800.1 | Wheat | cytosol | 57.83 | 60.73 |
| Os01t0963600-01 | Rice | extracellular | 33.04 | 41.76 |
| Zm00001d011813_P001 | Maize | extracellular | 29.57 | 37.57 |
| KXG34187 | Sorghum | cytosol, mitochondrion, nucleus | 28.7 | 35.48 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G510200.1 | EnsemblPlantsGene:TraesCS3A01G510200 | GO:GO:0006950 | GO:GO:0008150 | InterPro:ABA_WDS | PANTHER:PTHR33801 |
| PANTHER:PTHR33801:SF8 | PFAM:PF02496 | SEG:seg | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr3A:-:730327845..730328798
Molecular Weight (calculated)
24913.6 Da
IEP (calculated)
7.978
GRAVY (calculated)
-0.991
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGYYNGGGR TMSYSNTDEC FHGGRTMYSN TTEECYDAGK HGHGHGHGHG HGHGGANMYA NTTDVECFDS GRHGHGGGGR TMYSNTVDEE CFDSGRHGHG
101: HGHGHSYGHN DGRAMSYSTT TEECFGGGEQ GQGYYKKEVQ QHKNRERVGE VGALAAGAFA LHEGYEVKKD PTHARKHQIE AGVAGARRRG LRVPRAEAGR
201: VRRAAVQDAR PQQLLQLSNH ACIQRPPIVV
101: HGHGHSYGHN DGRAMSYSTT TEECFGGGEQ GQGYYKKEVQ QHKNRERVGE VGALAAGAFA LHEGYEVKKD PTHARKHQIE AGVAGARRRG LRVPRAEAGR
201: VRRAAVQDAR PQQLLQLSNH ACIQRPPIVV
001: MKKITIPVES LDEEDDFLLQ LAAIEAEAAA KRPRVSSIPE GPYMAALKGS KSDQWQQSPL NPASKSRSVA VTTGGFQRSD GGGGVAGEQD FPEKSCPCGV
101: GICLILTSNT PKNPGRKFYK CPNREENGGC GFFQWCDAVQ SSGTSTTTSN SYGNGNDTKF PDHQCPCGAG LCRVLTAKTG ENVGRQFYRC PVFEGSCGFF
201: KWCNDNVVSS PTSYSVTKNS NFGDSDTRGY QNAKTGTPCY KCGKEGHWAR DCTVQSDTGP VKSTSAAGDC FKCGKPGHWS RDCTAQSGNP KYEPGQMKSS
301: SSSGECYKCG KQGHWSRDCT GQSSNQQFQS GQAKSTSSTG DCYKCGKAGH WSRDCTSPAQ TTNTPGKRQR QY
101: GICLILTSNT PKNPGRKFYK CPNREENGGC GFFQWCDAVQ SSGTSTTTSN SYGNGNDTKF PDHQCPCGAG LCRVLTAKTG ENVGRQFYRC PVFEGSCGFF
201: KWCNDNVVSS PTSYSVTKNS NFGDSDTRGY QNAKTGTPCY KCGKEGHWAR DCTVQSDTGP VKSTSAAGDC FKCGKPGHWS RDCTAQSGNP KYEPGQMKSS
301: SSSGECYKCG KQGHWSRDCT GQSSNQQFQS GQAKSTSSTG DCYKCGKAGH WSRDCTSPAQ TTNTPGKRQR QY
Arabidopsis Description
DNA topoisomerase [Source:UniProtKB/TrEMBL;Acc:Q9M1L9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.