Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G078700.1 | Wheat | nucleus | 90.0 | 89.56 |
| TraesCS4A01G236300.1 | Wheat | nucleus | 86.83 | 85.99 |
| HORVU4Hr1G013410.1 | Barley | nucleus | 66.59 | 71.65 |
| Zm00001d033353_P001 | Maize | nucleus | 50.0 | 49.04 |
| TraesCS5D01G083500.1 | Wheat | nucleus, plastid | 40.98 | 40.38 |
| OQU91384 | Sorghum | nucleus | 44.63 | 34.99 |
| TraesCS2D01G202100.1 | Wheat | nucleus | 20.49 | 27.45 |
| TraesCS5D01G319200.1 | Wheat | plastid | 12.93 | 23.45 |
| TraesCS6D01G377000.1 | Wheat | nucleus | 18.78 | 23.33 |
Protein Annotations
| MapMan:15.5.7.1 | MapMan:26.9.1.7 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 |
| InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31194 | PANTHER:PTHR31194:SF41 |
| SMART:SM00380 | SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS4D01G077500 | EnsemblPlants:TraesCS4D01G077500.1 | TIGR:cd00018 | SEG:seg |
Description
No Description!
Coordinates
chr4D:+:51608489..51609721
Molecular Weight (calculated)
44038.5 Da
IEP (calculated)
4.448
GRAVY (calculated)
-0.523
Length
410 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMKRKLSPT EADLDSDDHH KPDTSSITTA TRPEPWAATV GAVATAQPAR KRFVGVRQRP SGRWVAEIKD TIQKIRVWLG TFDTAEEAAR AYDEAACLLR
101: GANTRTNFWP RAAAPAATSD GHGGAGLAEN HGHLHHHTPP PSALPSKVTN LLLLRLKRAR SISDEHISAS ATAQEALGQQ QQEQEEYGAG SFHVDDFLSY
201: DSNVDEHGVV KYEEDSHCSR DAEDDEEDVS VEEEEAPLDF GFMDTHPSPP GDVGDAGLFS PFEMMAAEIG GAVEAEAEAP EYGGGENENS AAIHEVMKRM
301: TYERKISASL YALSGVSECL RLRLGDVGHG LALSGLRDAC MKKRQEQNQE AVVDCVEGGH EESSSSNSSS SSEVASCSPE AGISSPNADA VDSDVVMWSS
401: LDLAPICFMS
101: GANTRTNFWP RAAAPAATSD GHGGAGLAEN HGHLHHHTPP PSALPSKVTN LLLLRLKRAR SISDEHISAS ATAQEALGQQ QQEQEEYGAG SFHVDDFLSY
201: DSNVDEHGVV KYEEDSHCSR DAEDDEEDVS VEEEEAPLDF GFMDTHPSPP GDVGDAGLFS PFEMMAAEIG GAVEAEAEAP EYGGGENENS AAIHEVMKRM
301: TYERKISASL YALSGVSECL RLRLGDVGHG LALSGLRDAC MKKRQEQNQE AVVDCVEGGH EESSSSNSSS SSEVASCSPE AGISSPNADA VDSDVVMWSS
401: LDLAPICFMS
001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT
Arabidopsis Description
RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.