Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G168600.1 | Wheat | nucleus | 91.34 | 91.34 |
| TraesCS5B01G160900.1 | Wheat | nucleus | 90.4 | 90.74 |
| HORVU5Hr1G050970.2 | Barley | nucleus | 82.67 | 82.21 |
| Os09t0128400-01 | Rice | nucleus | 34.09 | 81.9 |
| TraesCS7A01G151300.1 | Wheat | nucleus | 40.49 | 40.34 |
| TraesCS6A01G354900.1 | Wheat | mitochondrion | 30.13 | 33.13 |
| TraesCS4A01G367600.1 | Wheat | cytosol | 25.61 | 29.31 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G163600.3 | EnsemblPlantsGene:TraesCS5A01G163600 | PANTHER:PTHR33494 | PANTHER:PTHR33494:SF1 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr5A:-:350519841..350524030
Molecular Weight (calculated)
58699.9 Da
IEP (calculated)
6.609
GRAVY (calculated)
-0.621
Length
531 amino acids
Sequence
(BLAST)
(BLAST)
001: MVHLPHMGKL RRGLKEEAVD DDGDAAGAAG AEASPFHKRS RLAHQQQPPQ QWSTGGASVS NQQSSQHDFL EEPSPLGLRL KKSPSLVDLI QMKLVQAGKA
101: KDARHGGTAS ASEKLKASNF PGSILRIGSW EWVSRHEGDL VVKCYFAKHK LVWEVLDGGL KSKIEIQWSD ICALKVVCPE TEPGTLEIAL SRQPLFFRET
201: NPQPRKHTLW QATSDFTAGQ ASMHRRHFLQ CAPGMMNKHV EKLVHCDPRL CSLSQQNEIT LENPYFESRS SIFEDPDDVK CQNFVHNKDD DDQLTPQRFR
301: ELLQHHSASG RIDAEERQEA GTSDGLPQGF SNSVADSQVI KQDDGSSVGE PHTNILSWNG FKLPGIRRSM SKSEIANHIG HHIYRHMYSG NLPAADGGAG
401: TSGKLAIDDI TRYLLNDSQI LDGGNDSTGK LAFDEMTRQL LNDSQITIAA DERMLMSRVN SLCSLIQRDS GTGQVNSGVH SDNNEIHERK PQAYAPLVEG
501: DSGNGSLPPR QEPFGDLLTH LPRISSFPHF L
101: KDARHGGTAS ASEKLKASNF PGSILRIGSW EWVSRHEGDL VVKCYFAKHK LVWEVLDGGL KSKIEIQWSD ICALKVVCPE TEPGTLEIAL SRQPLFFRET
201: NPQPRKHTLW QATSDFTAGQ ASMHRRHFLQ CAPGMMNKHV EKLVHCDPRL CSLSQQNEIT LENPYFESRS SIFEDPDDVK CQNFVHNKDD DDQLTPQRFR
301: ELLQHHSASG RIDAEERQEA GTSDGLPQGF SNSVADSQVI KQDDGSSVGE PHTNILSWNG FKLPGIRRSM SKSEIANHIG HHIYRHMYSG NLPAADGGAG
401: TSGKLAIDDI TRYLLNDSQI LDGGNDSTGK LAFDEMTRQL LNDSQITIAA DERMLMSRVN SLCSLIQRDS GTGQVNSGVH SDNNEIHERK PQAYAPLVEG
501: DSGNGSLPPR QEPFGDLLTH LPRISSFPHF L
001: MVEMMRSENH LRQASKHRNN NFPVKLEIIE DSLEEEHAPL NKRSKLWSNG TSVSKFSLLE EPSPLGLSLK KSPSFQELIE MKLSQSGDDS NSVKKESFGF
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
Arabidopsis Description
ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9ZUI1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.