Factsheet for TraesCS5B01G527800.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G344700.1	Wheat	extracellular, vacuole	89.88	90.09
TraesCS5D01G526800.1	Wheat	extracellular, vacuole	89.18	89.6
TraesCS5B01G526500.1	Wheat	extracellular	45.41	67.72
TraesCS5B01G526600.1	Wheat	extracellular	45.41	67.48
TraesCS5B01G527000.1	Wheat	extracellular	44.94	67.02
TraesCS5B01G527100.1	Wheat	vacuole	66.59	65.81
TraesCS5B01G527600.1	Wheat	extracellular	21.18	64.29
TraesCS5B01G528000.1	Wheat	extracellular	21.41	62.33
TraesCS5B01G568900.1	Wheat	extracellular, plasma membrane	38.12	61.36
TraesCS5B01G572200.1	Wheat	extracellular	45.65	53.44
TraesCS7B01G002400.1	Wheat	extracellular	46.82	53.07
TraesCS5B01G371700.1	Wheat	extracellular	46.12	52.97
TraesCS7B01G002800.1	Wheat	extracellular	46.35	52.53
TraesCS7B01G000500.1	Wheat	extracellular	44.0	50.27
TraesCS7B01G000700.1	Wheat	extracellular	38.12	47.65
TraesCS7B01G000600.1	Wheat	extracellular	44.94	36.45

Protein Annotations

Gene3D:2.150.10.10	Gene3D:3.80.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR011049	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp
PFAM:PF13855	PANTHER:PTHR43932	PANTHER:PTHR43932:SF10	SMART:SM00369	SUPFAM:SSF101967	SUPFAM:SSF52058
InterPro:Serralysin-like_metalloprot_C	SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS5B01G527800	EnsemblPlants:TraesCS5B01G527800.1	TIGR:cd12796
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:686761957..686771218

Molecular Weight (calculated)

44120.7 Da

IEP (calculated)

8.335

GRAVY (calculated)

0.108

Length

425 amino acids

Sequence
(BLAST)

001: MAKYWLLLLL LLLAFLLPAA HAKSCHPDDL CALRGFAGNL GGGGALLRAA WSGASCCRWE GVGCDSSNGR VTVLRLPRYG LAGPIPGASL AGLVQLEELF
101: LGSNSFVGSL PKELFSLAGL RKLSLESNEL TGKLSSRLGK LKNLTLLNLS VNRFFGRLPD VFGDLTSLDH LAMYSNGLSG SLPPSLSSLS SLCELNLRNN
201: SLSGLISHVN FSGMPLLASV DFSANNLSGS LPVSLVDCSA LKSLTLANNQ LVGTIPSWIG ELDNLRCLDI SNNSLVGEVP KGLSCLEGLT AVDNSAGMAF
301: TNMPLYVKHN RRALQQQANV ISGNNNTVRS GGGNVLSGDN NTVISGNNNT LSGTNNTVVF GSNNVLTGSN HVVSGSNNVV SDTGHVVNGS SNTVSGRNNM
401: VTGNNNTVSG SNHVVTGNNK VVTGG

Best Arabidopsis Sequence Match ( AT1G33590.2 )
(BLAST)

001: MQMDWSKTST LTSQLSSNLF PTTNSSLLSI NTTQFTTMNS SFTLFIFTFV IFLQCLNPTG AATCHPDDEA GLLAFKAGIT RDPSGILSSW KKGTACCSWN
101: GVTCLTTDRV SALSVAGQAD VAGSFLSGTL SPSLAKLKHL DGIYFTDLKN ITGSFPQFLF QLPNLKYVYI ENNRLSGTLP ANIGALSQLE AFSLEGNRFT
201: GPIPSSISNL TLLTQLKLGN NLLTGTIPLG VANLKLMSYL NLGGNRLTGT IPDIFKSMPE LRSLTLSRNG FSGNLPPSIA SLAPILRFLE LGHNKLSGTI
301: PNFLSNFKAL DTLDLSKNRF SGVIPKSFAN LTKIFNLDLS HNLLTDPFPV LNVKGIESLD LSYNQFHLNT IPKWVTSSPI IFSLKLAKCG IKMSLDDWKP
401: AQTFYYDFID LSENEITGSP ARFLNQTEYL VEFKAAGNKL RFDMGKLTFA KTLTTLDISR NLVFGKVPAM VAGLKTLNVS HNHLCGKLPV TKFPASAFVG
501: NDCLCGSPLS PCKA

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:TAIR;Acc:AT1G33590]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.