Factsheet for TraesCS6A01G202300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, nucleus

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus, peroxisome
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G212200.1	Wheat	mitochondrion, nucleus, peroxisome, plastid	98.18	91.81
TraesCS7A01G468100.1	Wheat	cytosol, mitochondrion, peroxisome	73.72	89.38
TraesCS5A01G006600.1	Wheat	cytosol, mitochondrion, peroxisome	72.99	88.5
TraesCS2A01G465300.1	Wheat	cytosol, mitochondrion, peroxisome	72.63	88.05
TraesCS5A01G412500.1	Wheat	cytosol, mitochondrion, peroxisome	64.6	87.19
TraesCS3B01G115600.1	Wheat	cytosol, mitochondrion, peroxisome	71.53	86.73
Zm00001d037405_P001	Maize	endoplasmic reticulum, extracellular	30.66	50.6
HORVU7Hr1G101500.4	Barley	endoplasmic reticulum	50.0	23.38
Os06t0684000-02	Rice	mitochondrion	50.0	23.3
TraesCS7A01G448800.2	Wheat	mitochondrion, peroxisome	49.27	23.0
EER90248	Sorghum	mitochondrion	47.08	22.09
Zm00001d036557_P002	Maize	mitochondrion	48.91	21.79
TraesCS7A01G306600.1	Wheat	mitochondrion	42.7	20.31
TraesCS3A01G316500.1	Wheat	mitochondrion	39.42	18.85
TraesCS3A01G349900.1	Wheat	mitochondrion	25.91	14.17
TraesCS2A01G203200.1	Wheat	plastid	25.91	12.68
KRH22445	Soybean	peroxisome	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS6A01G202300.1	EnsemblPlantsGene:TraesCS6A01G202300	Gene3D:3.50.50.100	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:IPR036188
PANTHER:PTHR43706	PANTHER:PTHR43706:SF3	PFAM:PF07992	SEG:seg	SUPFAM:SSF51905	MapMan:35.1

Description

No Description!

Coordinates

chr6A:+:338113131..338114240

Molecular Weight (calculated)

29759.5 Da

IEP (calculated)

5.971

GRAVY (calculated)

-0.239

Length

274 amino acids

Sequence
(BLAST)

001: MDRSLREKEK MREREGRRGR RKREERGEGG AALIDGSRGG AADGGLSGCA TTGGSQASSD RCYLFLAAQQ VAVLGEQGSI GSTGWGGGLP NSDCASSSLP
101: RHRPGQLSTN PTAPASDANT TRLYSNQTCE YLPECFKIDL MIHYRSAVGT NLDGNGDLMV DYDYLVLALG VTVNTFNTPG VMEHCHFLKV VEDAQKIRKS
201: VIDCFEKASL PNLSEEEKRK ILHFVIIGGG PTGVEFAVEL HDFLVKDLVK LYPAIEENSQ LLLALCLFLL FIAQ

Best Arabidopsis Sequence Match ( AT4G28220.1 )
(BLAST)

001: MTLLSSLGRA SRSAPLASKL LLLGTLSGGS IVAYADANEE ANKKEEHKKK KVVVLGTGWA GISFLKDLDI TSYDVQVVSP QNYFAFTPLL PSVTCGTVEA
101: RSIVESVRNI TKKKNGEIEL WEADCFKIDH VNQKVHCRPV FKDDPEASQE FSLGYDYLIV AVGAQVNTFG TPGVLENCHF LKEVEDAQRI RRGVIDCFEK
201: AILPGLTEEQ RRRKLHFVIV GGGPTGVEFA AELHDFIIED ITKIYPSVKE LVKITLIQSG DHILNTFDER ISSFAEQKFT RDGIDVQTGM RVMSVTDKDI
301: TVKVKSSGEL VSIPHGLILW STGVGTRPVI SDFMEQVGQG GRRAVATNEW LQVTGCENVY AVGDCASIAQ RKILGDIANI FKAADADNSG TLTMEELEGV
401: VDDIIVRYPQ VELYLKSKHM RHINDLLADS EGNARKEVDI EAFKLALSEA DSQMKTLPAT AQVAAQQGAY LAKCFNRMEQ CKELPEGPKR FRTGGHHQFR
501: PFQYKHFGQF APLGGDQAAA ELPGDWVSAG KSAQWLWYSV YASKQVSWRT RALVVSDWTR RYIFGRDSSR I

Arabidopsis Description

NDB1External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q1JPL4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.