Factsheet for Os06t0684000-02

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 2
mitochondrion 6
peroxisome 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 23257241
peroxisome: 23257241

gfp PMID: 23257241 doi

L Xu, C Carrie, SR Law, MW Murcha, J Whelan

Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90248	Sorghum	mitochondrion	87.07	87.67
TraesCS7A01G448800.2	Wheat	mitochondrion, peroxisome	85.37	85.52
TraesCS7B01G348600.1	Wheat	mitochondrion, peroxisome	84.52	84.96
KRH22445	Soybean	peroxisome	7.31	84.31
HORVU7Hr1G101500.4	Barley	endoplasmic reticulum	81.97	82.25
Zm00001d036557_P002	Maize	mitochondrion	85.03	81.3
TraesCS7D01G438100.1	Wheat	peroxisome, plastid	84.86	80.48
Zm00001d037405_P001	Maize	endoplasmic reticulum, extracellular	19.39	68.67
Os05t0331200-01	Rice	mitochondrion	63.61	65.04
Os08t0141400-01	Rice	mitochondrion	38.61	63.59
TraesCS5A01G412500.1	Wheat	cytosol, mitochondrion, peroxisome	20.58	59.61
TraesCS7A01G468100.1	Wheat	cytosol, mitochondrion, peroxisome	21.77	56.64
TraesCS5A01G006600.1	Wheat	cytosol, mitochondrion, peroxisome	21.43	55.75
TraesCS2A01G465300.1	Wheat	cytosol, mitochondrion, peroxisome	21.26	55.31
TraesCS3B01G115600.1	Wheat	cytosol, mitochondrion, peroxisome	21.09	54.87
TraesCS3B01G604700.1	Wheat	cytosol, mitochondrion, peroxisome	20.75	54.71
TraesCS6A01G202300.1	Wheat	mitochondrion, nucleus, peroxisome	23.3	50.0
TraesCS4A01G212200.1	Wheat	mitochondrion, nucleus, peroxisome, plastid	23.3	46.76
Os01t0830100-01	Rice	mitochondrion	26.02	33.55
Os07t0564500-01	Rice	mitochondrion	30.61	32.03

Protein Annotations

MapMan:2.4.2.1.2	Gene3D:3.50.50.100	EntrezGene:4341876	ProteinID:BAD45556.1	ProteinID:BAF20308.1	ProteinID:BAS99181.1
ProteinID:EEE66237.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0003955	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019646	GO:GO:0055114	InterPro:IPR002048
InterPro:IPR036188	EnsemblPlantsGene:Os06g0684000	EnsemblPlants:Os06t0684000-02	PFAM:PF07992	PRINTS:PR00368	ScanProsite:PS00018
PFscan:PS50222	PANTHER:PTHR43706	PANTHER:PTHR43706:SF3	UniProt:Q655G1	SUPFAM:SSF47473	SUPFAM:SSF51905
UniParc:UPI000043A31E	RefSeq:XP_015641070.1	RefSeq:XP_015641071.1	SEG:seg	:	:

Description

Similar to FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Calcium-binding EF-hand. (Os06t0684000-01);Similar to External rotenone-insensitive NADPH dehydrogenase. (Os06t0684000-02)

Coordinates

chr6:-:28504190..28508808

Molecular Weight (calculated)

65716.0 Da

IEP (calculated)

7.008

GRAVY (calculated)

-0.157

Length

588 amino acids

Sequence
(BLAST)

001: MGFFFFASRA AARFLGEARI IHPGVSTAAL LVAAASGGGL VAYADSAGEN ASSETSQEAP RKKKVVVLGT GWAGTSFLKD LDCSKYEVKV ISPRNYFAFT
101: PLLPSVTCGT VEARSIVEPI RKMLEKKRKD VAFYEAECFK IDASKKAVHC RSAVGTNFDG NGDFMVDYDY LVVALGATVN TFNTPGVMEN CYFLKEVEDA
201: QKIRRNVIDC FEKASLPNIS EEEKRKILHF VIIGGGPTGV EFAAEMHDFL VEDLVKLYPA IQDFVKITII QSGEHILNMF DQRIATFAEM KFQRDGIEVN
301: TGFRVVKVSD DLITMKSKSL GEVSVPYGMA VWSAGIGTRP VIMDFMQQIG QTNRRVLATN EWLRVHECDN IYAIGDCASI TQRKIMDDIS TVFKMADKDN
401: SGTLTLKEIN DVLEDICIRY PQVELYMKSM HMLDIRDLIK DAIGDSHKES MVVNIEEFKK ALSHVDSQVK SIPATAQVAA QQGHYLAECF NKMDQCKEHP
501: EGPLRMTGTG SGRHNFRPFR YKHLGQFAPL GGEQAAAELP GDWVSMGHST QWLWYSVYAS KQVSWRTRML VVSDWTRRFI FGRDSSRI

Best Arabidopsis Sequence Match ( AT4G28220.1 )
(BLAST)

001: MTLLSSLGRA SRSAPLASKL LLLGTLSGGS IVAYADANEE ANKKEEHKKK KVVVLGTGWA GISFLKDLDI TSYDVQVVSP QNYFAFTPLL PSVTCGTVEA
101: RSIVESVRNI TKKKNGEIEL WEADCFKIDH VNQKVHCRPV FKDDPEASQE FSLGYDYLIV AVGAQVNTFG TPGVLENCHF LKEVEDAQRI RRGVIDCFEK
201: AILPGLTEEQ RRRKLHFVIV GGGPTGVEFA AELHDFIIED ITKIYPSVKE LVKITLIQSG DHILNTFDER ISSFAEQKFT RDGIDVQTGM RVMSVTDKDI
301: TVKVKSSGEL VSIPHGLILW STGVGTRPVI SDFMEQVGQG GRRAVATNEW LQVTGCENVY AVGDCASIAQ RKILGDIANI FKAADADNSG TLTMEELEGV
401: VDDIIVRYPQ VELYLKSKHM RHINDLLADS EGNARKEVDI EAFKLALSEA DSQMKTLPAT AQVAAQQGAY LAKCFNRMEQ CKELPEGPKR FRTGGHHQFR
501: PFQYKHFGQF APLGGDQAAA ELPGDWVSAG KSAQWLWYSV YASKQVSWRT RALVVSDWTR RYIFGRDSSR I

Arabidopsis Description

NDB1External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q1JPL4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.