CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036557_P002	Maize	mitochondrion	94.18	89.43
Os06t0684000-02	Rice	mitochondrion	87.67	87.07
KRH22445	Soybean	peroxisome	7.53	86.27
TraesCS7A01G448800.2	Wheat	mitochondrion, peroxisome	84.76	84.33
TraesCS7B01G348600.1	Wheat	mitochondrion, peroxisome	84.25	84.1
HORVU7Hr1G101500.4	Barley	endoplasmic reticulum	81.16	80.89
TraesCS7D01G438100.1	Wheat	peroxisome, plastid	84.59	79.68
Zm00001d037405_P001	Maize	endoplasmic reticulum, extracellular	20.72	72.89
EES14522	Sorghum	mitochondrion	67.12	67.47
EES01568	Sorghum	mitochondrion	62.67	63.32
TraesCS5A01G412500.1	Wheat	cytosol, mitochondrion, peroxisome	20.21	58.13
TraesCS7A01G468100.1	Wheat	cytosol, mitochondrion, peroxisome	21.4	55.31
TraesCS5A01G006600.1	Wheat	cytosol, mitochondrion, peroxisome	21.06	54.42
TraesCS2A01G465300.1	Wheat	cytosol, mitochondrion, peroxisome	21.06	54.42
TraesCS3B01G115600.1	Wheat	cytosol, mitochondrion, peroxisome	20.72	53.54
TraesCS3B01G604700.1	Wheat	cytosol, mitochondrion, peroxisome	20.38	53.36
TraesCS6A01G202300.1	Wheat	mitochondrion, nucleus, peroxisome	22.09	47.08
TraesCS4A01G212200.1	Wheat	mitochondrion, nucleus, peroxisome, plastid	22.09	44.03
EES01700	Sorghum	mitochondrion	29.28	34.0
EER97387	Sorghum	mitochondrion	28.94	29.86

Protein Annotations

MapMan:2.4.2.1.2	Gene3D:3.50.50.100	EntrezGene:8083311	UniProt:C5Z889	EnsemblPlants:EER90248	ProteinID:EER90248
ProteinID:EER90248.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005509	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0055114	InterPro:IPR002048	InterPro:IPR036188	PFAM:PF07992	PRINTS:PR00368
ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR43706	PANTHER:PTHR43706:SF3	EnsemblPlantsGene:SORBI_3010G235000	SUPFAM:SSF47473
SUPFAM:SSF51905	unigene:Sbi.11626	UniParc:UPI0001A896BF	RefSeq:XP_002438881.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:-:57751593..57760184

Molecular Weight (calculated)

64831.0 Da

IEP (calculated)

6.872

GRAVY (calculated)

-0.126

Length

584 amino acids

Sequence
(BLAST)

001: MGFSFFTYRA GARLLDGIAR PGVSTAALLF AAASGGGLVA YADSAAESAP EPSQGAPKKK LLVLGTGWAG TSFLKNLDCS QYEVKVISPR NYFAFTPLLP
101: SVTCGTVEPR SIIEPVRRMF EKKNKDVTFC EAECFKIDAN KKTVHCRSAV GTNLDGNGDF MLDYDYLVVA LGATVSTFNT PGVLEHCCFL KEVEDAQKIR
201: RCVIDCFEKA SLPNISAEEK RKILHFVVIG GGPTGVEFAA EMHDFLVEDL VKLYPAIQDF VKITIIQSGE HILNMFDERI AAFAEQKFQR DGIEVCTGFR
301: VIKVSDDSIT MKSKSAGKEV SVPYGMAVWS AGIGTRPVIM DFMQQIGQTN RRALATNEWL RVRECEGVYA IGDCATVSQR KIMDDISMVF KMADKDNSGT
401: LTLKEINDVL EDICIRYPQV ELYMKSMHML DIADLIKGAI GDSHKESMVV DIEEFKKALS HVDSQVKNAP ATAQVAAQQG QYLAECFNKM EKCKEDPEGP
501: LRMTGGSGRH FFRPFRYKHF GQFAPLGGEQ AAAELPGDWV SMGHSTQWLW YSVYASKQVS WRTRVLVVSD WTRRFIFGRD SSRI

Best Arabidopsis Sequence Match ( AT4G28220.1 )
(BLAST)

001: MTLLSSLGRA SRSAPLASKL LLLGTLSGGS IVAYADANEE ANKKEEHKKK KVVVLGTGWA GISFLKDLDI TSYDVQVVSP QNYFAFTPLL PSVTCGTVEA
101: RSIVESVRNI TKKKNGEIEL WEADCFKIDH VNQKVHCRPV FKDDPEASQE FSLGYDYLIV AVGAQVNTFG TPGVLENCHF LKEVEDAQRI RRGVIDCFEK
201: AILPGLTEEQ RRRKLHFVIV GGGPTGVEFA AELHDFIIED ITKIYPSVKE LVKITLIQSG DHILNTFDER ISSFAEQKFT RDGIDVQTGM RVMSVTDKDI
301: TVKVKSSGEL VSIPHGLILW STGVGTRPVI SDFMEQVGQG GRRAVATNEW LQVTGCENVY AVGDCASIAQ RKILGDIANI FKAADADNSG TLTMEELEGV
401: VDDIIVRYPQ VELYLKSKHM RHINDLLADS EGNARKEVDI EAFKLALSEA DSQMKTLPAT AQVAAQQGAY LAKCFNRMEQ CKELPEGPKR FRTGGHHQFR
501: PFQYKHFGQF APLGGDQAAA ELPGDWVSAG KSAQWLWYSV YASKQVSWRT RALVVSDWTR RYIFGRDSSR I

Arabidopsis Description

NDB1External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q1JPL4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.