Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G333100.1 | Wheat | cytosol | 69.23 | 68.75 |
| TraesCS6A01G350700.1 | Wheat | cytosol | 63.64 | 59.87 |
| TraesCS6A01G350600.1 | Wheat | cytosol | 67.13 | 59.26 |
| TraesCS6A01G059800.1 | Wheat | cytosol | 54.55 | 50.98 |
| TraesCS5A01G424800.1 | Wheat | cytosol | 52.45 | 50.34 |
| Zm00001d037894_P001 | Maize | cytosol | 55.24 | 47.02 |
| EES18117 | Sorghum | cytosol | 48.95 | 46.05 |
| TraesCS5A01G424700.1 | Wheat | cytosol | 33.57 | 43.24 |
| TraesCS5A01G369900.1 | Wheat | cytosol | 39.86 | 40.71 |
| TraesCS5A01G369800.1 | Wheat | cytosol | 40.56 | 40.56 |
| TraesCS6A01G350500.1 | Wheat | cytosol | 61.54 | 39.82 |
| TraesCS6A01G350900.1 | Wheat | nucleus | 40.56 | 30.53 |
| TraesCS3A01G396200.1 | Wheat | cytosol | 49.65 | 25.82 |
| TraesCS4A01G250900.1 | Wheat | cytosol | 43.36 | 13.63 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G350800.1 | EnsemblPlantsGene:TraesCS6A01G350800 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009415 | GO:GO:0009628 |
| InterPro:Dehydrin | InterPro:Dehydrin_CS | PANTHER:PTHR33346 | PANTHER:PTHR33346:SF3 | PFAM:PF00257 | ScanProsite:PS00315 |
| ScanProsite:PS00823 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr6A:-:582630751..582631295
Molecular Weight (calculated)
14816.1 Da
IEP (calculated)
9.880
GRAVY (calculated)
-1.012
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTSMATRWP DMASALAWAR TAASAPAAHK TGGILQRSNS SSSSSSSEDD GMGGRRKKGI KEKIKEKLPG GHGDQQQTAD TYGQQGHTGM TSSTGAHGTT
101: AIGGTYGQQG HTGMSGNETH GTDDTGEKKG IMDKIKEKLP GQH
101: AIGGTYGQQG HTGMSGNETH GTDDTGEKKG IMDKIKEKLP GQH
001: MASYQNRPGG QATDEYGNPI QQQYDEYGNP MGGGGYGTGG GGGATGGQGY GTGGQGYGSG GQGYGTGGQG YGTGTGTEGF GTGGGARHHG QEQLHKESGG
101: GLGGMLHRSG SGSSSSSEDD GQGGRRKKGI TQKIKEKLPG HHDQSGQAQA MGGMGSGYDA GGYGGEHHEK KGMMDKIKEK LPGGGR
101: GLGGMLHRSG SGSSSSSEDD GQGGRRKKGI TQKIKEKLPG HHDQSGQAQA MGGMGSGYDA GGYGGEHHEK KGMMDKIKEK LPGGGR
Arabidopsis Description
RAB18RAB18 [Source:UniProtKB/TrEMBL;Acc:A0A178UN24]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.