CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037894_P001	Maize	cytosol	80.26	72.62
TraesCS5A01G424700.1	Wheat	cytosol	51.32	70.27
TraesCS5A01G424800.1	Wheat	cytosol	65.79	67.11
TraesCS6D01G333200.1	Wheat	cytosol	68.42	67.1
TraesCS5B01G426800.1	Wheat	cytosol	65.79	66.67
TraesCS5B01G426700.1	Wheat	cytosol	64.47	65.33
TraesCS6A01G350700.1	Wheat	cytosol	65.13	65.13
TraesCS5D01G433200.1	Wheat	cytosol	65.13	65.13
TraesCS5D01G433300.1	Wheat	cytosol	65.13	64.29
TraesCSU01G086200.1	Wheat	nucleus	63.16	63.58
TraesCS6A01G059800.1	Wheat	cytosol	63.82	63.4
TraesCS6B01G383600.1	Wheat	cytosol	65.79	63.29
TraesCSU01G122200.1	Wheat	cytosol	61.18	62.42
TraesCS6B01G383800.1	Wheat	cytosol	67.76	62.05
TraesCS6D01G333600.1	Wheat	cytosol	65.79	59.88
TraesCS6D01G333100.1	Wheat	cytosol	56.58	59.72
TraesCS6D01G333000.1	Wheat	cytosol	63.16	59.26
TraesCS6A01G350600.1	Wheat	cytosol	62.5	58.64
HORVU6Hr1G011050.1	Barley	cytosol	53.95	58.16
TraesCS6D01G333300.1	Wheat	cytosol	57.89	55.0
HORVU6Hr1G084010.1	Barley	cytosol	68.42	54.45
HORVU5Hr1G103460.2	Barley	cytosol	65.79	53.19
HORVU6Hr1G084070.10	Barley	cytosol	67.76	50.24
TraesCS6A01G350800.1	Wheat	plastid	46.05	48.95
TraesCS6A01G350500.1	Wheat	cytosol	65.79	45.25
TraesCS6D01G332900.2	Wheat	cytosol	67.76	44.59
TraesCS6B01G383500.2	Wheat	cytosol	67.11	44.16
TraesCS6A01G350900.1	Wheat	nucleus	53.95	43.16
EER87862	Sorghum	cytosol	61.84	24.23

Protein Annotations

MapMan:35.2	EntrezGene:8077913	ProteinID:ACZ57339.1	UniProt:C5YX70	InterPro:Dehydrin	InterPro:Dehydrin_CS
EnsemblPlants:EES18117	ProteinID:EES18117	ProteinID:EES18117.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006950	GO:GO:0008150	GO:GO:0009414	GO:GO:0009415
GO:GO:0009628	GO:GO:0009631	GO:GO:0009719	GO:GO:0009737	EMBL:HM243499	EMBL:KC893318
PFAM:PF00257	ScanProsite:PS00315	ScanProsite:PS00823	PANTHER:PTHR33346	PANTHER:PTHR33346:SF3	EnsemblPlantsGene:SORBI_3009G116700
unigene:Sbi.1244	UniParc:UPI00016EEE60	RefSeq:XP_002439687.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:+:45915615..45916682

Molecular Weight (calculated)

15400.8 Da

IEP (calculated)

9.393

GRAVY (calculated)

-1.132

Length

152 amino acids

Sequence
(BLAST)

001: MEYGQQGQHG HGTTGRVDQY GNPVGAGTGG MGTGTGGMGQ LGEHGGAGMG GGQFQPAREE HKTGGILHRS GSSSSSSSED DGMGGRRKKG IKEKIKEKLP
101: GGHKDNQHAT ATGGGAAYGQ QEHTGAGTYG TEGTGEKKGI MDKIKEKLPG QH

Best Arabidopsis Sequence Match ( AT5G66400.1 )
(BLAST)

001: MASYQNRPGG QATDEYGNPI QQQYDEYGNP MGGGGYGTGG GGGATGGQGY GTGGQGYGSG GQGYGTGGQG YGTGTGTEGF GTGGGARHHG QEQLHKESGG
101: GLGGMLHRSG SGSSSSSEDD GQGGRRKKGI TQKIKEKLPG HHDQSGQAQA MGGMGSGYDA GGYGGEHHEK KGMMDKIKEK LPGGGR

Arabidopsis Description

RAB18RAB18 [Source:UniProtKB/TrEMBL;Acc:A0A178UN24]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.