Factsheet for TraesCS6D01G285400.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G334700.1	Wheat	nucleus	97.87	97.87
TraesCS6A01G306300.2	Wheat	nucleus	96.8	96.8
HORVU6Hr1G075640.13	Barley	nucleus	93.6	93.85
Os02t0747600-01	Rice	nucleus	64.8	71.89
KXG30761	Sorghum	nucleus	68.0	69.86
Zm00001d018050_P003	Maize	nucleus	56.27	54.66
GSMUA_Achr7P16540_001	Banana	mitochondrion	36.27	49.45
TraesCS7D01G292500.1	Wheat	plastid	36.27	38.75
TraesCS5D01G486600.2	Wheat	nucleus	24.8	20.67
TraesCS1D01G242800.1	Wheat	nucleus	22.93	20.38
TraesCS2D01G515800.1	Wheat	nucleus	26.13	20.16
TraesCS7D01G512600.1	Wheat	nucleus	22.67	19.59
TraesCS1D01G059200.1	Wheat	nucleus	26.4	19.37

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467
PANTHER:PTHR32467:SF47	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS6D01G285400	EnsemblPlants:TraesCS6D01G285400.2	TIGR:cd00018
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:393652122..393656147

Molecular Weight (calculated)

41042.7 Da

IEP (calculated)

5.159

GRAVY (calculated)

-0.680

Length

375 amino acids

Sequence
(BLAST)

001: MMKSGEEVSQ GQQMNGFVEE KAAGESGDGR KIERSPSINL NSLPAIAPAT TEIGVLHCAV ESEANDASTQ KGDESSGTDQ KKVPKNEEVD EGEVQACADV
101: KSHSVDPLNS ENHAGEKDAL VTVPENEGCA DGGDNYKGVQ VLSIVKKDES EEIVDSINPV TVAEYREEKG TAGSTSAITA VRAPGSRSSC FHGVTRHRWS
201: GKYEAHLWDS TCRVEGRRRK GKQVYLGSYD TEQKAARAYD VAALKFFGLN TKLNFSISEY EKELADIQDM SPEECVTYLR RRSSCFSRGA SIYRGVTRRQ
301: KDGRWQARIG LIAGTRDIYL GTFKTEEEAA EAYDIAAIEI RGKNAVTNFD RSNYMDRGMH CIEGAGLKLL ATKPE

Best Arabidopsis Sequence Match ( AT1G51190.1 )
(BLAST)

001: MNSNNWLAFP LSPTHSSLPP HIHSSQNSHF NLGLVNDNID NPFQNQGWNM INPHGGGGEG GEVPKVADFL GVSKSGDHHT DHNLVPYNDI HQTNASDYYF
101: QTNSLLPTVV TCASNAPNNY ELQESAHNLQ SLTLSMGSTG AAAAEVATVK ASPAETSADN SSSTTNTSGG AIVEATPRRT LETFGQRTSI YRGVTRHRWT
201: GRYEAHLWDN SCRREGQSRK GRQVYLGGYD KEEKAARAYD LAALKYWGPS TTTNFPITNY EKEVEEMKNM TRQEFVASIR RKSSGFSRGA SMYRGVTRHH
301: QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFE INRYDVKAIL ESNTLPIGGG AAKRLKEAQA LESSRKREEM IALGSNFHQY
401: GAASGSSSVA SSSRLQLQPY PLSIQQPFEH LHHHQPLLTL QNNNDISQYH DSFSYIQTQL HLHQQQTNNY LQSSSHTSQL YNAYLQSNPG LLHGFVSDNN
501: NTSGFLGNNG IGIGSSSTVG SSAEEEFPAV KVDYDMPPSG GATGYGGWNS GESAQGSNPG GVFTMWNE

Arabidopsis Description

PLT2AP2-like ethylene-responsive transcription factor PLT2 [Source:UniProtKB/Swiss-Prot;Acc:Q5YGP7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.