Factsheet for HORVU6Hr1G075640.13

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G285400.2	Wheat	nucleus	93.85	93.6
TraesCS6B01G334700.1	Wheat	nucleus	92.78	92.53
TraesCS6A01G306300.2	Wheat	nucleus	92.51	92.27
Os02t0747600-01	Rice	nucleus	65.51	72.49
KXG30761	Sorghum	nucleus	67.91	69.59
HORVU2Hr1G063070.1	Barley	nucleus	16.04	61.22
HORVU2Hr1G061450.1	Barley	nucleus	15.78	55.14
Zm00001d018050_P003	Maize	nucleus	56.42	54.66
GSMUA_Achr7P16540_001	Banana	mitochondrion	36.9	50.18
HORVU7Hr1G070230.12	Barley	nucleus	35.29	44.44
HORVU5Hr1G112440.1	Barley	nucleus	24.33	20.68
HORVU3Hr1G004480.38	Barley	nucleus, plastid	15.24	20.28
HORVU1Hr1G056500.15	Barley	nucleus, plastid	23.26	19.33
HORVU1Hr1G011800.4	Barley	nucleus	25.94	18.87
HORVU7Hr1G116220.4	Barley	nucleus	22.19	14.02

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	UniProt:A0A287UR14	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:HORVU6Hr1G075640	EnsemblPlants:HORVU6Hr1G075640.13	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF47	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000B47542B
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:520976368..520981224

Molecular Weight (calculated)

41010.4 Da

IEP (calculated)

5.079

GRAVY (calculated)

-0.805

Length

374 amino acids

Sequence
(BLAST)

001: MKSGEEVSQG QQMDGFVEEK AAGESRDGQK IERSPSINLN SLPAMAPAAA EIGVLHGAAE SEANDASTQK GDESSGTDQK KVPKNEEVDE GEIQGRADMK
101: SDSVDPLNSE NHAGEKDALV TVPENEGRAD GGDNYKGVQV LSIVKKDEPE EIVDSINPVT VAEYREEKGA TSSTSAITAV RAPGSRSSCY HGVTRHRWSG
201: KYEAHLWDST CRVEGRRRKG KQGYAGSYDT EQKAARAYDV AALKYWGLNT KLNFSISEYE KELADIQDMS PEECVTYLRR RSSCFSRGAS IYRGVTRRQK
301: DGRWQARIGL IAGTRDIYLG TFKTEEEAAE AYDIAAIEIR GKNAVTNFDR SNYMDRGMHC IEGAGLKLLA TKPE

Best Arabidopsis Sequence Match ( AT1G51190.1 )
(BLAST)

001: MNSNNWLAFP LSPTHSSLPP HIHSSQNSHF NLGLVNDNID NPFQNQGWNM INPHGGGGEG GEVPKVADFL GVSKSGDHHT DHNLVPYNDI HQTNASDYYF
101: QTNSLLPTVV TCASNAPNNY ELQESAHNLQ SLTLSMGSTG AAAAEVATVK ASPAETSADN SSSTTNTSGG AIVEATPRRT LETFGQRTSI YRGVTRHRWT
201: GRYEAHLWDN SCRREGQSRK GRQVYLGGYD KEEKAARAYD LAALKYWGPS TTTNFPITNY EKEVEEMKNM TRQEFVASIR RKSSGFSRGA SMYRGVTRHH
301: QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFE INRYDVKAIL ESNTLPIGGG AAKRLKEAQA LESSRKREEM IALGSNFHQY
401: GAASGSSSVA SSSRLQLQPY PLSIQQPFEH LHHHQPLLTL QNNNDISQYH DSFSYIQTQL HLHQQQTNNY LQSSSHTSQL YNAYLQSNPG LLHGFVSDNN
501: NTSGFLGNNG IGIGSSSTVG SSAEEEFPAV KVDYDMPPSG GATGYGGWNS GESAQGSNPG GVFTMWNE

Arabidopsis Description

PLT2AP2-like ethylene-responsive transcription factor PLT2 [Source:UniProtKB/Swiss-Prot;Acc:Q5YGP7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.