Factsheet for HORVU1Hr1G011800.4

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU6Hr1G075650.1
HORVU7Hr1G038130.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39250.1	HORVU6Hr1G075650.1	AT3G47620.1	21798944
AT2G39250.1	HORVU7Hr1G038130.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G059200.1	Wheat	nucleus	96.11	96.67
TraesCS1A01G058400.1	Wheat	nucleus	95.72	96.47
TraesCS1B01G076300.1	Wheat	nucleus	95.53	95.9
OQU77289	Sorghum	nucleus	61.87	72.77
Os05t0121600-01	Rice	nucleus	67.51	67.77
Zm00001d010987_P001	Maize	nucleus	47.28	62.95
PGSC0003DMT400065313	Potato	nucleus	49.03	50.5
HORVU2Hr1G063070.1	Barley	nucleus	9.34	48.98
Solyc11g072600.1.1	Tomato	nucleus	45.53	48.65
HORVU2Hr1G061450.1	Barley	nucleus	10.12	48.6
HORVU5Hr1G112440.1	Barley	nucleus	41.25	48.18
Solyc04g049800.2.1	Tomato	nucleus	35.99	46.48
PGSC0003DMT400031401	Potato	nucleus	36.38	45.95
VIT_13s0019g03550.t01	Wine grape	nucleus	43.0	44.47
CDY68119	Canola	nucleus	28.6	42.86
Bra007123.1-P	Field mustard	nucleus	28.6	42.86
CDX73419	Canola	nucleus	28.6	42.73
CDY07510	Canola	nucleus	27.24	42.68
AT3G54990.1	Thale cress	nucleus	28.4	42.2
KRH70384	Soybean	nucleus	31.71	39.18
AT2G39250.1	Thale cress	nucleus	24.32	38.46
KRH33335	Soybean	nucleus	30.74	38.26
Bra002510.1-P	Field mustard	nucleus	33.46	38.05
Bra020262.1-P	Field mustard	nucleus	31.71	38.0
CDX80199	Canola	nucleus	33.46	37.89
CDY31576	Canola	nucleus	33.27	37.83
CDY09223	Canola	nucleus	31.32	37.35
AT5G60120.2	Thale cress	nucleus	33.27	33.73
HORVU7Hr1G070230.12	Barley	nucleus	17.12	29.63
HORVU7Hr1G116220.4	Barley	nucleus	32.68	28.38
HORVU6Hr1G075640.13	Barley	nucleus	18.87	25.94
HORVU1Hr1G056500.15	Barley	nucleus, plastid	17.9	20.44
HORVU3Hr1G004480.38	Barley	nucleus, plastid	9.92	18.15

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	UniProt:A0A287EN23	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:HORVU1Hr1G011800	EnsemblPlants:HORVU1Hr1G011800.4	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF46	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000B464239
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:-:28643228..28647889

Molecular Weight (calculated)

55955.0 Da

IEP (calculated)

7.131

GRAVY (calculated)

-0.705

Length

514 amino acids

Sequence
(BLAST)

001: MELDLNVEEK PAAAARSDSG TSESSVLNAE ASCGGGAAPA EEASSSTRQP APAPRAVLEF SILRSSASAE GENDVGADDD EEEATPSPPP PPPRHYHQHQ
101: HLLQPQQLVT QELFPGPAAG GGGPPPMHVP QHWAELGFFR PAAPPPDMRM LQLQQQQALA QLPPPPAAQP PAAKKSRRGP RSRSSQYRGV TFYRRTGRWE
201: SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGVDADIN FNLSDYEDDM KQMKGLSKEE FVHVLRRQST GFSRGSSKYR GVTLHKCGRW EARMGQFLGK
301: KYIYLGLFDN EVEAARAYDK AAIKCNGREA VTNFEPSTYD AELLNEAAAE GADVDLNLSI SQPTSQSPKR DKSTLGLQLH HGSYEGSELK RPKVDAPPEM
401: VAIPHRYPVL TEHPPIWHGQ SYPLFLNNED AARDHSRRPE VATGGVPTWA WRVSHPPPTQ PMPLFSSSSS AAASSGFSKT AAAAAPAAPS ASFRFDPMAP
501: SSSSSNQHHH HHPR

Best Arabidopsis Sequence Match ( AT2G28550.3 )
(BLAST)

001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI NTNGREAVTN
301: FEMSSYQNEI NSESNNSEID LNLGISLSTG NAPKQNGRLF HFPSNTYETQ RGVSLRIDNE YMGKPVNTPL PYGSSDHRLY WNGACPSYNN PAEGRATEKR
401: SEAEGMMSNW GWQRPGQTSA VRPQPPGPQP PPLFSVAAAS SGFSHFRPQP PNDNATRGYF YPHP

Arabidopsis Description

RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.