Factsheet for PGSC0003DMT400031401

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g049800.2.1	Tomato	nucleus	84.52	86.43
VIT_13s0019g03550.t01	Wine grape	nucleus	50.37	41.25
PGSC0003DMT400071732	Potato	nucleus	45.45	40.48
PGSC0003DMT400065313	Potato	nucleus	49.63	40.48
PGSC0003DMT400028706	Potato	nucleus	43.98	40.22
OQU77289	Sorghum	nucleus	43.0	40.05
Zm00001d010987_P001	Maize	nucleus	37.59	39.64
KRH70384	Soybean	nucleus	39.07	38.22
KRH33335	Soybean	nucleus	38.33	37.77
Os05t0121600-01	Rice	nucleus	46.93	37.3
TraesCS1A01G058400.1	Wheat	nucleus	45.95	36.67
Zm00001d035512_P001	Maize	nucleus	45.95	36.59
TraesCS1D01G059200.1	Wheat	nucleus	45.95	36.59
HORVU1Hr1G011800.4	Barley	nucleus	45.95	36.38
TraesCS1B01G076300.1	Wheat	nucleus	45.7	36.33
Bra002510.1-P	Field mustard	nucleus	40.29	36.28
CDY31576	Canola	nucleus	40.29	36.28
CDY09223	Canola	nucleus	38.33	36.19
Bra020262.1-P	Field mustard	nucleus	38.08	36.13
CDX80199	Canola	nucleus	39.8	35.68
PGSC0003DMT400016585	Potato	nucleus	40.79	34.95
PGSC0003DMT400016881	Potato	nucleus	21.87	34.77
PGSC0003DMT400065501	Potato	nucleus	41.03	33.07
PGSC0003DMT400010231	Potato	nucleus	41.52	32.94
AT5G60120.2	Thale cress	nucleus	40.29	32.35
PGSC0003DMT400074397	Potato	nucleus	10.57	22.4
PGSC0003DMT400036707	Potato	nucleus	11.79	20.87
PGSC0003DMT400023709	Potato	nucleus	8.35	15.89
PGSC0003DMT400035808	Potato	nucleus, plastid	5.9	15.69
PGSC0003DMT400023711	Potato	nucleus	7.37	10.91
PGSC0003DMT400055211	Potato	nucleus	7.62	8.59

Protein Annotations

EntrezGene:102579807	MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M1AVM0	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400012038	PGSC:PGSC0003DMG400012038
EnsemblPlants:PGSC0003DMT400031401	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF46	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI000295C86E	RefSeq:XP_006340542.1	SEG:seg	:	:	:

Description

APETALA2 [Source:PGSC_GENE;Acc:PGSC0003DMG400012038]

Coordinates

chr4:+:33397908..33400993

Molecular Weight (calculated)

44648.1 Da

IEP (calculated)

9.600

GRAVY (calculated)

-0.613

Length

407 amino acids

Sequence
(BLAST)

001: MLDLNTYSAT SNTASSDSNS SSFQPRNHSL STLSFSILKS DREDESSTTG DMLTRQLFPG KDETKKIQGQ SQCWLNLSVS ESGGVQVPVY KPPVHKKSRR
101: GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGVDAD INFNITDYDE DMKQMKNLSK EEFVQVLRRQ SNGFSRGNSK
201: YRSGVTLHKC GQFLGKKAYE KAAIKCNGRE AVTNFVASTY EREMKEDNKD GGSGENLDLN LWISPPLEGL KGGEIGRNVH FNFGGRDMVI GKTFEIESSS
301: TVPQGPPTAS KLSILTGMYP VFSPHSTEGA MTKAEAASSS PGLPNWAWKT HSQGVVTPVP VFSSSAASSG FSTATTLYTN SLLPPSNQLS LPTNSTFQHP
401: PLTLNIS

Best Arabidopsis Sequence Match ( AT2G28550.1 )
(BLAST)

001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKAY DKAAINTNGR EAVTNFEMSS YQNEINSESN
301: NSEIDLNLGI SLSTGNAPKQ NGRLFHFPSN TYETQRGVSL RIDNEYMGKP VNTPLPYGSS DHRLYWNGAC PSYNNPAEGR ATEKRSEAEG MMSNWGWQRP
401: GQTSAVRPQP PGPQPPPLFS VAAASSGFSH FRPQPPNDNA TRGYFYPHP

Arabidopsis Description

RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.