Factsheet for PGSC0003DMT400065501

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g064960.2.1	Tomato	nucleus	93.07	93.25
PGSC0003DMT400016585	Potato	nucleus	56.04	59.58
CDX69282	Canola	nucleus	45.74	57.75
PGSC0003DMT400010231	Potato	nucleus	57.82	56.92
AT4G36920.1	Thale cress	nucleus	47.92	56.02
Bra011741.1-P	Field mustard	nucleus	47.72	55.66
TraesCS2A01G514200.1	Wheat	nucleus	40.59	55.56
CDY29538	Canola	nucleus	47.13	55.09
CDY62228	Canola	nucleus	46.93	54.99
Bra017809.1-P	Field mustard	nucleus	46.93	54.86
GSMUA_Achr8P18550_001	Banana	endoplasmic reticulum, nucleus	38.42	53.59
CDY71179	Canola	nucleus	23.96	53.3
CDY71282	Canola	nucleus	24.55	53.22
Os04t0649100-03	Rice	nucleus	43.76	48.04
Zm00001d026448_P001	Maize	nucleus	37.23	45.52
TraesCS2B01G542400.2	Wheat	nucleus	41.98	43.8
TraesCS2D01G515800.1	Wheat	nucleus	41.98	43.62
PGSC0003DMT400028706	Potato	nucleus	38.22	43.37
PGSC0003DMT400071732	Potato	nucleus	38.42	42.45
PGSC0003DMT400065313	Potato	nucleus	41.58	42.08
PGSC0003DMT400031401	Potato	nucleus	33.07	41.03
OQU82446	Sorghum	endoplasmic reticulum, vacuole	32.08	40.91
Zm00001d002075_P001	Maize	nucleus	42.97	40.71
PGSC0003DMT400016881	Potato	nucleus	20.0	39.45
PGSC0003DMT400074397	Potato	nucleus	10.89	28.65
PGSC0003DMT400036707	Potato	nucleus	12.48	27.39
PGSC0003DMT400023709	Potato	nucleus	10.49	24.77
PGSC0003DMT400023711	Potato	nucleus	8.91	16.36
PGSC0003DMT400035808	Potato	nucleus, plastid	4.36	14.38
PGSC0003DMT400055211	Potato	nucleus	6.53	9.14

Protein Annotations

EntrezGene:102589826	MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
ncoils:Coil	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M1CE42	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400025479
PGSC:PGSC0003DMG400025479	EnsemblPlants:PGSC0003DMT400065501	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF18	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI000294B658	RefSeq:XP_006360214.1	SEG:seg	:	:

Description

PHAP2A protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025479]

Coordinates

chr2:+:23445282..23448830

Molecular Weight (calculated)

57680.6 Da

IEP (calculated)

8.788

GRAVY (calculated)

-1.008

Length

505 amino acids

Sequence
(BLAST)

001: MWNLNDSPDH RRDYEGKGVE RSISNSSSSA VEELYGSEEE DEFLEQNGLK GKKKKSIPSK IFGFSMIAPP NNNNDDNLSS ESEPPVTRQF FPVDESEIGS
101: GNFNDRSCRF PRAHWAGVKF YQPEPSTAVL GKGSELSQVQ VQVQVQVQPM KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR
201: AYDRAAIKFR GVEADINFNL EDYEEDLKQM KNLTKEEFVH VLRRQSTGFP RGSSKYRGVT LHKCGRWEAR MGQLLGKKYV YLGLFDTENE AARAYDKAAI
301: NCNGKDAVTN FDPCIYENEL NSSESSNKAA DHSLDLSLGS STSKQKSREM EDTNKDQNYS SMQFDVDWRH QGSRLKQQHS PIDMEYGRRR NVYNETDTLQ
401: LLSQTHLHSP GSFKTNSNEM QRFGQYMRAG DSQMIPPQFT SSNYQVQFPS SNNRRDTQQW QSNNVAPPHL FATAAASSGF PQQILRHQNW PHKNGFHYSL
501: TRPSN

Best Arabidopsis Sequence Match ( AT4G36920.2 )
(BLAST)

001: MWDLNDAPHQ TQREEESEEF CYSSPSKRVG SFSNSSSSAV VIEDGSDDDE LNRVRPNNPL VTHQFFPEMD SNGGGVASGF PRAHWFGVKF CQSDLATGSS
101: AGKATNVAAA VVEPAQPLKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNIDD YDDDLKQMTN
201: LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEVEAA RAYDKAAIKC NGKDAVTNFD PSIYDEELNA ESSGNPTTPQ
301: DHNLDLSLGN SANSKHKSQD MRLRMNQQQQ DSLHSNEVLG LGQTGMLNHT PNSNHQFPGS SNIGSGGGFS LFPAAENHRF DGRASTNQVL TNAAASSGFS
401: PHHHNQIFNS TSTPHQNWLQ TNGFQPPLMR PS

Arabidopsis Description

AP2Floral homeotic protein APETALA 2 [Source:UniProtKB/Swiss-Prot;Acc:P47927]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.