Factsheet for Bra017809.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29538	Canola	nucleus	99.77	99.77
CDY62228	Canola	nucleus	96.99	97.22
Bra011741.1-P	Field mustard	nucleus	91.2	90.99
AT4G36920.1	Thale cress	nucleus	87.73	87.73
TraesCS2A01G514200.1	Wheat	nucleus	50.0	58.54
Bra012139.1-P	Field mustard	nucleus	46.99	56.39
Solyc03g044300.2.1	Tomato	nucleus	52.08	56.11
GSMUA_Achr8P18550_001	Banana	endoplasmic reticulum, nucleus	45.83	54.7
VIT_07s0031g00220.t01	Wine grape	nucleus	59.95	51.08
Solyc02g093150.2.1	Tomato	nucleus	51.85	50.22
KRH28441	Soybean	nucleus	57.41	50.0
PGSC0003DMT400016585	Potato	nucleus	53.7	48.84
PGSC0003DMT400010231	Potato	nucleus	57.41	48.34
Os04t0649100-03	Rice	nucleus	51.16	48.04
Solyc02g064960.2.1	Tomato	nucleus	55.56	47.62
Zm00001d026448_P001	Maize	nucleus	45.37	47.46
PGSC0003DMT400065501	Potato	nucleus	54.86	46.93
TraesCS2B01G542400.2	Wheat	nucleus	51.62	46.07
TraesCS2D01G515800.1	Wheat	nucleus	51.62	45.88
Bra011939.1-P	Field mustard	nucleus	46.06	43.83
OQU82446	Sorghum	endoplasmic reticulum, vacuole	38.89	42.42
Zm00001d002075_P001	Maize	nucleus	52.08	42.21
Bra000487.1-P	Field mustard	nucleus	38.89	40.29
Bra007123.1-P	Field mustard	nucleus	31.25	39.36
Bra020262.1-P	Field mustard	nucleus	33.1	33.33
Bra002510.1-P	Field mustard	nucleus	34.72	33.19
Bra004641.1-P	Field mustard	nucleus	21.3	22.22
Bra000237.1-P	Field mustard	nucleus	21.3	19.87

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	ProteinID:AAO22527	ProteinID:AAO22527.1	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	EMBL:AY176683	EnsemblPlantsGene:Bra017809	EnsemblPlants:Bra017809.1	EnsemblPlants:Bra017809.1-P	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	UniProt:M4DMS4	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467
PANTHER:PTHR32467:SF18	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002540CDB	SEG:seg	:

Description

AT4G36920 (E=4e-204) AP2, FLO2, FL1 | AP2 (APETALA 2); transcription factor

Coordinates

chrA03:-:30611490..30613651

Molecular Weight (calculated)

47927.4 Da

IEP (calculated)

7.281

GRAVY (calculated)

-0.763

Length

432 amino acids

Sequence
(BLAST)

001: MWDLNDSPHQ TVRQEESEEF CYSSPGKRVG SFSTSSSSAV VIEDGSDDDE PNRVRPNNPL ITHQFFPEME SSVGDNGGGG TGPGFPRSHW FGVQFSQSDL
101: ATGSSVGKPA TVGAVVEPTQ PLKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVEADINF NIEDYDNDMK
201: QMTNLTKEEF VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE VEAARAYDKA AIKCNGKDAV TNFDSSIYDE ELNAESSGNP
301: IQQDHNLDLS LGNSVNSKHK GQDMRLKMNQ QDSLHSNEIL GLGQTGMVNY IPNSVHQFPG SSNIHRGGGF SLFPVTENHQ FEGRTTANQV LANAAASSGF
401: SPHNHNQIFN STPTSHQNWL QTNGFQPPLM RP

Best Arabidopsis Sequence Match ( AT4G36920.2 )
(BLAST)

001: MWDLNDAPHQ TQREEESEEF CYSSPSKRVG SFSNSSSSAV VIEDGSDDDE LNRVRPNNPL VTHQFFPEMD SNGGGVASGF PRAHWFGVKF CQSDLATGSS
101: AGKATNVAAA VVEPAQPLKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNIDD YDDDLKQMTN
201: LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEVEAA RAYDKAAIKC NGKDAVTNFD PSIYDEELNA ESSGNPTTPQ
301: DHNLDLSLGN SANSKHKSQD MRLRMNQQQQ DSLHSNEVLG LGQTGMLNHT PNSNHQFPGS SNIGSGGGFS LFPAAENHRF DGRASTNQVL TNAAASSGFS
401: PHHHNQIFNS TSTPHQNWLQ TNGFQPPLMR PS

Arabidopsis Description

AP2Floral homeotic protein APETALA 2 [Source:UniProtKB/Swiss-Prot;Acc:P47927]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.