Factsheet for Bra000237.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
endoplasmic reticulum 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35402	Canola	nucleus	86.39	97.32
CDY22537	Canola	nucleus	87.04	94.16
Bra004641.1-P	Field mustard	nucleus	81.86	91.55
AT2G41710.4	Thale cress	nucleus	77.97	78.65
VIT_08s0007g08580.t01	Wine grape	nucleus	61.56	66.9
KRG95240	Soybean	nucleus	57.88	64.11
KRH66909	Soybean	nucleus	58.1	63.59
Solyc02g030210.2.1	Tomato	nucleus	45.79	60.4
GSMUA_AchrUn_...	Banana	nucleus	40.82	54.94
KRH72011	Soybean	nucleus	52.7	54.59
TraesCS1A01G242800.1	Wheat	nucleus	43.84	48.56
Os05t0389000-02	Rice	nucleus	44.49	48.47
TraesCS1B01G254300.1	Wheat	nucleus	44.06	48.34
TraesCS1D01G242800.1	Wheat	nucleus	44.06	48.34
EES19464	Sorghum	nucleus	43.41	48.32
HORVU1Hr1G056500.15	Barley	nucleus, plastid	43.84	45.11
Zm00001d038087_P003	Maize	mitochondrion	32.18	30.85
Bra007123.1-P	Field mustard	nucleus	17.28	23.32
Bra012139.1-P	Field mustard	nucleus	17.71	22.78
Bra011939.1-P	Field mustard	nucleus	21.17	21.59
PGSC0003DMT400074397	Potato	nucleus	8.86	21.35
Bra017809.1-P	Field mustard	nucleus	19.87	21.3
Bra011741.1-P	Field mustard	nucleus	19.87	21.25
Bra000487.1-P	Field mustard	nucleus	19.01	21.1
Bra020262.1-P	Field mustard	nucleus	18.57	20.05
Bra002510.1-P	Field mustard	nucleus	18.57	19.03
PGSC0003DMT400036707	Potato	nucleus	9.29	18.7

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra000237
EnsemblPlants:Bra000237.1	EnsemblPlants:Bra000237.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4C7Q9	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF32	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002540354
SEG:seg	:	:	:	:	:

Description

AT2G41710 (E=2e-130) | ovule development protein, putative

Coordinates

chrA03:-:10086365..10088859

Molecular Weight (calculated)

50891.6 Da

IEP (calculated)

8.963

GRAVY (calculated)

-0.669

Length

463 amino acids

Sequence
(BLAST)

001: MASMSSPDQG PKTEAGGGGE SSENVSASDQ MLMYRSFKKA KKERGCTAKE RISKMPPCTA GKRSSIYRGV TRHRWTGRYE AHLWDKSTWN QNQNKKGKQG
101: FSSFLSTSDN IFSPNPTKLI FLFLCLKYCH LDANSATPVY LGAYDDEEAA ARAYDLAALK YWGPGTLINF PVTDYSRDLE EMQNLSREEY LATLRRKSSG
201: FSRGIAKYRG LQSRWEASAS RMPGPEYFSN LHYGAGDERG AEGDFLGSFC LERKIDLTGY IKWWGVNKSR QPESSSKASE DAKVEDAGTE LKALEHTSQA
301: TEPYKAPNLG VLQRKGKQIT SPSSTSSALS ILSASPAYKS MEEKVMKIQE SSSTRENDEN ANRNITSIEK SHGKEIEKPA VSHGVALGSG GGVAPAAALS
401: LQKSMYPLSS LLTAPLLSNY NALDPLGDRI LWTPFLPPGS SHTSEVTKTE TSCSTYSYLP QEK

Best Arabidopsis Sequence Match ( AT2G41710.1 )
(BLAST)

001: MASVSSSDQG PKTEAGCSGG GGGESSETVA ASDQMLLYRG FKKAKKERGC TAKERISKMP PCTAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK
101: GKQVYLGAYD DEEAAARAYD LAALKYWGPG TLINFPVTDY TRDLEEMQNL SREEYLASLR RKSSGFSRGI AKYRGLQSRW DASASRMPGP EYFSNIHYGA
201: GDDRGTEGDF LGSFCLERKI DLTGYIKWWG ANKNRQPESS SKASEDANVE DAGTELKTLE HTSHATEPYK APNLGVLCGT QRKEKEISSP SSSSALSILS
301: QSPAFKSLEE KVLKIQESCN NENDENANRN IINMEKNNGK AIEKPVVSHG VALGGAAALS LQKSMYPLTS LLTAPLLTNY NTLDPLADPI LWTPFLPSGS
401: SLTSEVTKTE TSCSTYSYLP QEK

Arabidopsis Description

Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G41710]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.