CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95240	Soybean	nucleus	93.38	94.5
VIT_08s0007g08580.t01	Wine grape	nucleus	76.36	75.82
KRH72011	Soybean	nucleus	75.89	71.81
Solyc02g030210.2.1	Tomato	nucleus	56.26	67.81
Bra004641.1-P	Field mustard	nucleus	65.01	66.43
CDY35402	Canola	nucleus	61.7	63.5
CDY23833	Canola	nucleus	63.36	63.06
CDX79921	Canola	nucleus	63.36	62.18
CDY22537	Canola	nucleus	62.41	61.68
AT2G41710.4	Thale cress	nucleus	64.3	59.26
Bra000237.1-P	Field mustard	nucleus	63.59	58.1
GSMUA_AchrUn_...	Banana	nucleus	43.74	53.78
EES19464	Sorghum	nucleus	48.94	49.76
Os05t0389000-02	Rice	nucleus	48.7	48.47
TraesCS1D01G242800.1	Wheat	nucleus	47.04	47.16
TraesCS1B01G254300.1	Wheat	nucleus	47.04	47.16
TraesCS1A01G242800.1	Wheat	nucleus	46.57	47.13
HORVU1Hr1G056500.15	Barley	nucleus, plastid	46.57	43.78
Zm00001d038087_P003	Maize	mitochondrion	35.93	31.47
KRG89074	Soybean	nucleus	22.22	20.98
KRH67634	Soybean	nucleus	22.46	20.7
PGSC0003DMT400074397	Potato	nucleus	9.22	20.31
KRH22956	Soybean	nucleus	22.7	20.17
KRH24963	Soybean	nucleus	22.93	19.68
PGSC0003DMT400036707	Potato	nucleus	10.64	19.57
KRH70384	Soybean	nucleus	19.15	19.47
KRH10362	Soybean	nucleus	21.99	19.18
KRG95917	Soybean	mitochondrion	21.99	18.83
KRH77030	Soybean	nucleus	21.99	18.53
KRH33335	Soybean	nucleus	17.97	18.4
KRH04560	Soybean	nucleus	21.75	17.29
KRH57898	Soybean	nucleus	21.51	17.07
KRH28441	Soybean	nucleus	19.86	16.94

Protein Annotations

EntrezGene:100814117	MapMan:15.5.7.3	Gene3D:3.30.730.10	EMBL:ACUP02002018	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_03G136100	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	UniProt:I1JNC3	InterPro:IPR001471	InterPro:IPR036955	EnsemblPlants:KRH66909
ProteinID:KRH66909	ProteinID:KRH66909.1	EMBL:KT031074	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR32467	PANTHER:PTHR32467:SF32	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000295BB58	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:35199156..35203045

Molecular Weight (calculated)

47089.1 Da

IEP (calculated)

9.057

GRAVY (calculated)

-0.800

Length

423 amino acids

Sequence
(BLAST)

001: MASSSSDPGK SAETSEAAAL AVANDQLLLY RGLKKAKKER GCTAKERISK MPPCAAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQVYLGA
101: YDDEEAAARA YDLAALKYWG PGTLINFPVT DYARDLEEMQ NVSREEYLAS LRRKSSGFSR GLAKYRGLSS RWDPTYGRMS GSDYFNSMHY GAGDDSAAES
201: EYVSGFCLDR KIDLTSHIKW WGSNKSRHSD AGTRLSEEKK LGSAGDVCSE LKQLEQKVQP MEPYQMPQLG RLHNEKKHRS SSLSALSILS QSAAYKSLQE
301: KASKRQENST DNDENENKNT INKLDHGKAV EKPSNHDGGN DRLNIAMGMS GTMSLQRNAY PLTPFLSAPL LTAYNTVDPL VDPVLWTSLV PMLPAGLSRT
401: AEVTKTETSL ETSSTYTMFQ PEE

Best Arabidopsis Sequence Match ( AT2G41710.1 )
(BLAST)

001: MASVSSSDQG PKTEAGCSGG GGGESSETVA ASDQMLLYRG FKKAKKERGC TAKERISKMP PCTAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK
101: GKQVYLGAYD DEEAAARAYD LAALKYWGPG TLINFPVTDY TRDLEEMQNL SREEYLASLR RKSSGFSRGI AKYRGLQSRW DASASRMPGP EYFSNIHYGA
201: GDDRGTEGDF LGSFCLERKI DLTGYIKWWG ANKNRQPESS SKASEDANVE DAGTELKTLE HTSHATEPYK APNLGVLCGT QRKEKEISSP SSSSALSILS
301: QSPAFKSLEE KVLKIQESCN NENDENANRN IINMEKNNGK AIEKPVVSHG VALGGAAALS LQKSMYPLTS LLTAPLLTNY NTLDPLADPI LWTPFLPSGS
401: SLTSEVTKTE TSCSTYSYLP QEK

Arabidopsis Description

Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G41710]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.