Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES19464 | Sorghum | nucleus | 70.39 | 81.73 |
| TraesCS1A01G242800.1 | Wheat | nucleus | 59.01 | 68.18 |
| TraesCS1B01G254300.1 | Wheat | nucleus | 59.21 | 67.77 |
| TraesCS1D01G242800.1 | Wheat | nucleus | 59.01 | 67.54 |
| HORVU1Hr1G056500.15 | Barley | nucleus, plastid | 61.28 | 65.78 |
| Os05t0389000-02 | Rice | nucleus | 57.35 | 65.18 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.47 | 44.19 |
| VIT_08s0007g08580.t01 | Wine grape | nucleus | 32.92 | 37.32 |
| KRG95240 | Soybean | nucleus | 31.47 | 36.36 |
| Bra004641.1-P | Field mustard | nucleus | 30.85 | 35.99 |
| KRH66909 | Soybean | nucleus | 31.47 | 35.93 |
| CDY35402 | Canola | nucleus | 30.02 | 35.28 |
| CDY22537 | Canola | nucleus | 30.64 | 34.58 |
| CDY23833 | Canola | nucleus | 30.23 | 34.35 |
| Solyc02g030210.2.1 | Tomato | nucleus | 24.64 | 33.9 |
| CDX79921 | Canola | nucleus | 30.23 | 33.87 |
| KRH72011 | Soybean | nucleus | 31.26 | 33.78 |
| AT2G41710.4 | Thale cress | nucleus | 30.85 | 32.46 |
| Bra000237.1-P | Field mustard | nucleus | 30.85 | 32.18 |
| PGSC0003DMT400074397 | Potato | nucleus | 7.45 | 18.75 |
| PGSC0003DMT400036707 | Potato | nucleus | 8.9 | 18.7 |
| Zm00001d037511_P001 | Maize | nucleus | 7.25 | 17.68 |
| Zm00001d014670_P001 | Maize | endoplasmic reticulum, golgi | 6.83 | 17.65 |
| Zm00001d024468_P003 | Maize | nucleus | 9.94 | 16.55 |
| Zm00001d034629_P001 | Maize | nucleus | 14.49 | 16.17 |
| Zm00001d026448_P001 | Maize | nucleus | 13.66 | 15.98 |
| Zm00001d010987_P001 | Maize | nucleus | 12.22 | 15.29 |
| Zm00001d019230_P002 | Maize | plastid | 16.56 | 14.95 |
| Zm00001d002075_P001 | Maize | nucleus | 15.11 | 13.7 |
| Zm00001d035512_P001 | Maize | nucleus | 14.29 | 13.5 |
| Zm00001d046621_P001 | Maize | nucleus | 10.56 | 12.98 |
| Zm00001d018050_P003 | Maize | nucleus | 10.14 | 12.69 |
| Zm00001d013170_P001 | Maize | nucleus | 11.59 | 11.72 |
Protein Annotations
| EnsemblPlants:Zm00001d038087_P003 | EnsemblPlants:Zm00001d038087_T003 | EnsemblPlantsGene:Zm00001d038087 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:AP2-like_transcript_factor | PANTHER:PTHR32467 | PANTHER:PTHR32467:SF32 | ProteinID:AQK85585.1 | ProteinID:AQK85589.1 | SEG:seg |
| UniParc:UPI0008443A72 | UniProt:A0A1D6M327 | MapMan:35.1 | : | : | : |
Description
dwarf & irregular leaf1 dwarf & irregular leaf1
Coordinates
chr6:+:147379164..147385691
Molecular Weight (calculated)
52493.0 Da
IEP (calculated)
10.322
GRAVY (calculated)
-0.344
Length
483 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRPRIPLRP RPPVSPVPAH WAPRVPIAYR PDPAAPPPPC FFHTISNPTT THAAPKRSPV LRLAWLRCAA HTEPLAVAAR LGSAPTDRSI RPAVGAMASP
101: NPEAAGLQAV AVAGAGEGGS SSSLSAVAGA AALSGELVPR RALALRKERV CTAKERISRM PPCAAGKRSS IYRGVTRTDF GPSIGIGGQV DMRLTFGTKA
201: RGIRIRTKRA NRVSDYARDL EEMQMISKED YLVSLRRKSS AFYRGLPKYR GLLRQLHNSR WDTSLGLGND YMSLSCGKDI MLDGKFAGSF GLERKIDLTN
301: YIRWWLPKKT RQSDTSKTEE IADEIRAIES SMQQTEPYKL PSLGFSSPSK PSSMGLSACS ILSQSDAFKS FLEKSTKLSE ECSLSKEIVE GKTVASVPAT
401: GYDTGAININ MNELLVQRST YSMAPVMPTP MKSTWSPADP SVDPLFWSNF VLPSSQPVTM ATITTTTFAK NEVSSSDPFQ SQE
101: NPEAAGLQAV AVAGAGEGGS SSSLSAVAGA AALSGELVPR RALALRKERV CTAKERISRM PPCAAGKRSS IYRGVTRTDF GPSIGIGGQV DMRLTFGTKA
201: RGIRIRTKRA NRVSDYARDL EEMQMISKED YLVSLRRKSS AFYRGLPKYR GLLRQLHNSR WDTSLGLGND YMSLSCGKDI MLDGKFAGSF GLERKIDLTN
301: YIRWWLPKKT RQSDTSKTEE IADEIRAIES SMQQTEPYKL PSLGFSSPSK PSSMGLSACS ILSQSDAFKS FLEKSTKLSE ECSLSKEIVE GKTVASVPAT
401: GYDTGAININ MNELLVQRST YSMAPVMPTP MKSTWSPADP SVDPLFWSNF VLPSSQPVTM ATITTTTFAK NEVSSSDPFQ SQE
001: MASVSSSDQG PKTEAGCSGG GGGESSETVA ASDQMLLYRG FKKAKKERGC TAKERISKMP PCTAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK
101: GKQVYLGAYD DEEAAARAYD LAALKYWGPG TLINFPVTDY TRDLEEMQNL SREEYLASLR RKSSGFSRGI AKYRGLQSRW DASASRMPGP EYFSNIHYGA
201: GDDRGTEGDF LGSFCLERKI DLTGYIKWWG ANKNRQPESS SKASEDANVE DAGTELKTLE HTSHATEPYK APNLGVLCGT QRKEKEISSP SSSSALSILS
301: QSPAFKSLEE KVLKIQESCN NENDENANRN IINMEKNNGK AIEKPVVSHG VALGGAAALS LQKSMYPLTS LLTAPLLTNY NTLDPLADPI LWTPFLPSGS
401: SLTSEVTKTE TSCSTYSYLP QEK
101: GKQVYLGAYD DEEAAARAYD LAALKYWGPG TLINFPVTDY TRDLEEMQNL SREEYLASLR RKSSGFSRGI AKYRGLQSRW DASASRMPGP EYFSNIHYGA
201: GDDRGTEGDF LGSFCLERKI DLTGYIKWWG ANKNRQPESS SKASEDANVE DAGTELKTLE HTSHATEPYK APNLGVLCGT QRKEKEISSP SSSSALSILS
301: QSPAFKSLEE KVLKIQESCN NENDENANRN IINMEKNNGK AIEKPVVSHG VALGGAAALS LQKSMYPLTS LLTAPLLTNY NTLDPLADPI LWTPFLPSGS
401: SLTSEVTKTE TSCSTYSYLP QEK
Arabidopsis Description
Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G41710]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.