Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004641.1-P | Field mustard | nucleus | 92.58 | 96.38 |
| CDY23833 | Canola | nucleus | 90.02 | 91.29 |
| CDY35402 | Canola | nucleus | 84.22 | 88.32 |
| CDY22537 | Canola | nucleus | 84.69 | 85.28 |
| AT2G41710.4 | Thale cress | nucleus | 82.37 | 77.34 |
| VIT_08s0007g08580.t01 | Wine grape | nucleus | 65.43 | 66.2 |
| KRG95240 | Soybean | nucleus | 62.18 | 64.11 |
| KRH66909 | Soybean | nucleus | 62.18 | 63.36 |
| Solyc02g030210.2.1 | Tomato | nucleus | 48.26 | 59.26 |
| KRH72011 | Soybean | nucleus | 56.61 | 54.59 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.46 | 53.2 |
| Os05t0389000-02 | Rice | nucleus | 46.87 | 47.53 |
| EES19464 | Sorghum | nucleus | 45.71 | 47.36 |
| TraesCS1D01G242800.1 | Wheat | nucleus | 45.71 | 46.68 |
| TraesCS1B01G254300.1 | Wheat | nucleus | 45.71 | 46.68 |
| TraesCS1A01G242800.1 | Wheat | nucleus | 45.24 | 46.65 |
| HORVU1Hr1G056500.15 | Barley | nucleus, plastid | 45.24 | 43.33 |
| Zm00001d038087_P003 | Maize | mitochondrion | 33.87 | 30.23 |
| CDY71682 | Canola | nucleus | 12.99 | 27.05 |
| CDX73419 | Canola | nucleus | 18.33 | 22.97 |
| CDY68119 | Canola | nucleus | 18.1 | 22.74 |
| CDX69282 | Canola | nucleus | 20.65 | 22.25 |
| CDY07510 | Canola | nucleus | 16.71 | 21.95 |
| CDY01432 | Canola | nucleus | 18.1 | 21.67 |
| CDY12814 | Canola | nucleus | 18.1 | 21.61 |
| CDY04573 | Canola | nucleus | 22.27 | 21.15 |
| CDY15760 | Canola | nucleus | 22.27 | 21.15 |
| CDY62228 | Canola | nucleus | 21.11 | 21.11 |
| CDX83296 | Canola | nucleus | 21.35 | 21.1 |
| CDY29538 | Canola | nucleus | 21.11 | 21.06 |
| CDX95767 | Canola | nucleus | 20.19 | 20.86 |
| PGSC0003DMT400074397 | Potato | nucleus | 9.28 | 20.83 |
| CDY09223 | Canola | nucleus | 19.72 | 19.72 |
| CDY31576 | Canola | nucleus | 20.19 | 19.25 |
| CDX80199 | Canola | nucleus | 19.95 | 18.94 |
| PGSC0003DMT400036707 | Potato | nucleus | 9.51 | 17.83 |
| CDY71179 | Canola | nucleus | 8.82 | 16.74 |
| CDY71282 | Canola | nucleus | 8.82 | 16.31 |
| CDY19560 | Canola | nucleus | 1.86 | 7.77 |
Protein Annotations
| MapMan:15.5.7.3 | Gene3D:3.30.730.10 | GO:A0A078CRY9 | InterPro:AP2-like_transcript_factor | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDX79921 | ProteinID:CDX79921 | ProteinID:CDX79921.1 | ncoils:Coil | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00132777001 |
| InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 | PFscan:PS51032 | PANTHER:PTHR32467 | PANTHER:PTHR32467:SF32 |
| SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0004EF137E | SEG:seg | : | : |
Description
BnaA05g02350D
Coordinates
chrLK031819:+:855101..857669
Molecular Weight (calculated)
48027.2 Da
IEP (calculated)
9.256
GRAVY (calculated)
-0.714
Length
431 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSDQGPKT EAGGGGESSE TVAAASDEML LYRGFKKAKK ERGCTAKERI SKMPPCTAGK RSSIYRGVTR FRNDFKFRFL IIGYSNRRYA DVSLYLVLSY
101: RHRWTGRYEA HLWDKTTWNQ NQNKKGKQVY LGAYDDEEAA ARAYDLAALK YWGPGTLINF PVTDYSRDLE EMQNLSREEY LASLRRKSSG FSRGIAKYRG
201: LQSRWDASAS RMPGPEYFSN MHYGAGDERG TEGDFLGNFC LERKIDLTGY IKWWGVNKPR QPESSSSKAS EDAKVEDAGT ELKTLEHTSH ATEPYKAPNL
301: GVLQRKEKQI SSSALSILSA SPAYKSLEEK VLKIQESSSS ARENDENANQ KPVVSLGSGG VVPSGALSLQ KSMYPLTSLL TSPLLTNYNT LDPLGDPILW
401: TPFLPPGSSH TSEVTKTETS CSTYSYLPQE K
101: RHRWTGRYEA HLWDKTTWNQ NQNKKGKQVY LGAYDDEEAA ARAYDLAALK YWGPGTLINF PVTDYSRDLE EMQNLSREEY LASLRRKSSG FSRGIAKYRG
201: LQSRWDASAS RMPGPEYFSN MHYGAGDERG TEGDFLGNFC LERKIDLTGY IKWWGVNKPR QPESSSSKAS EDAKVEDAGT ELKTLEHTSH ATEPYKAPNL
301: GVLQRKEKQI SSSALSILSA SPAYKSLEEK VLKIQESSSS ARENDENANQ KPVVSLGSGG VVPSGALSLQ KSMYPLTSLL TSPLLTNYNT LDPLGDPILW
401: TPFLPPGSSH TSEVTKTETS CSTYSYLPQE K
001: MASVSSSDQG PKTEAGCSGG GGGESSETVA ASDQMLLYRG FKKAKKERGC TAKERISKMP PCTAGKRSSI YRGVTRFGCE LGVVLSVLEY GMFGLVDMHF
101: VSRLKLEEMS RHRWTGRYEA HLWDKSTWNQ NQNKKGKQVY LGAYDDEEAA ARAYDLAALK YWGPGTLINF PVTDYTRDLE EMQNLSREEY LASLRRKSSG
201: FSRGIAKYRG LQSRWDASAS RMPGPEYFSN IHYGAGDDRG TEGDFLGSFC LERKIDLTGY IKWWGANKNR QPESSSKASE DANVEDAGTE LKTLEHTSHA
301: TEPYKAPNLG VLCGTQRKEK EISSPSSSSA LSILSQSPAF KSLEEKVLKI QESCNNENDE NANRNIINME KNNGKAIEKP VVSHGVALGG AAALSLQKSM
401: YPLTSLLTAP LLTNYNTLDP LADPILWTPF LPSGSSLTSE VTKTETSCST YSYLPQEK
101: VSRLKLEEMS RHRWTGRYEA HLWDKSTWNQ NQNKKGKQVY LGAYDDEEAA ARAYDLAALK YWGPGTLINF PVTDYTRDLE EMQNLSREEY LASLRRKSSG
201: FSRGIAKYRG LQSRWDASAS RMPGPEYFSN IHYGAGDDRG TEGDFLGSFC LERKIDLTGY IKWWGANKNR QPESSSKASE DANVEDAGTE LKTLEHTSHA
301: TEPYKAPNLG VLCGTQRKEK EISSPSSSSA LSILSQSPAF KSLEEKVLKI QESCNNENDE NANRNIINME KNNGKAIEKP VVSHGVALGG AAALSLQKSM
401: YPLTSLLTAP LLTNYNTLDP LADPILWTPF LPSGSSLTSE VTKTETSCST YSYLPQEK
Arabidopsis Description
Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G41710]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.