Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15760 | Canola | nucleus | 100.0 | 22.69 |
| CDY04573 | Canola | nucleus | 96.12 | 21.81 |
| CDX95767 | Canola | nucleus | 68.93 | 17.03 |
| CDX83296 | Canola | nucleus | 68.93 | 16.28 |
| CDY71179 | Canola | nucleus | 14.56 | 6.61 |
| CDY71282 | Canola | nucleus | 14.56 | 6.44 |
| CDY09223 | Canola | nucleus | 25.24 | 6.03 |
| CDY31576 | Canola | nucleus | 23.3 | 5.31 |
| CDX80199 | Canola | nucleus | 23.3 | 5.29 |
| Os06t0639200-01 | Rice | nucleus | 15.53 | 4.79 |
| CDY68119 | Canola | nucleus | 13.59 | 4.08 |
| CDX73419 | Canola | nucleus | 13.59 | 4.07 |
| CDY12814 | Canola | nucleus | 13.59 | 3.88 |
| CDY62228 | Canola | nucleus | 14.56 | 3.48 |
| TraesCS7B01G440400.1 | Wheat | nucleus | 13.59 | 3.46 |
| TraesCS7D01G512600.1 | Wheat | nucleus | 14.56 | 3.46 |
| CDY07510 | Canola | nucleus | 10.68 | 3.35 |
| CDY01432 | Canola | nucleus | 11.65 | 3.33 |
| CDY29538 | Canola | nucleus | 13.59 | 3.24 |
| OQU76762 | Sorghum | nucleus | 13.59 | 2.97 |
| HORVU7Hr1G116220.4 | Barley | nucleus | 13.59 | 2.36 |
| CDY35402 | Canola | nucleus | 7.77 | 1.95 |
| CDY22537 | Canola | nucleus | 7.77 | 1.87 |
| CDX79921 | Canola | nucleus | 7.77 | 1.86 |
| CDX69282 | Canola | nucleus | 6.8 | 1.75 |
| CDY23833 | Canola | nucleus | 6.8 | 1.65 |
| Zm00001d046621_P001 | Maize | nucleus | 4.85 | 1.27 |
| CDY71682 | Canola | nucleus | 0.0 | 0.0 |
| Solyc02g030200.1.1 | Tomato | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY19560 | EnsemblPlantsGene:GSBRNA2T00009204001 | ProteinID:CDY19560 | ProteinID:CDY19560.1 | UniParc:UPI0004EE0109 | UniProt:A0A078FYZ7 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC09g13430DBnaC09g13430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FYZ7]
Coordinates
chrLK032097:-:644808..646148
Molecular Weight (calculated)
11003.5 Da
IEP (calculated)
8.912
GRAVY (calculated)
-0.891
Length
103 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKPVNAPLP YGSSDHRAYW NGYNNPVEGR ATEKRSEAEG GGMVSNWGWQ GPGQTSAMRP QPPGAQPQLF SVAAASSGFS NFRQQPPNDN ASASSLGYFY
101: PQP
101: PQP
001: MIKIIDSWLL IYIGGFDTAH AAARAYDRAA IKFRGVDADI NFTLGDYEED MKQVQNLSKE EFVHILRRQS TGFSRGSSKY RGVTLHKCGR WEARMGQFLG
101: KKAYDKAAIN TNGREAVTNF EMSSYQNEIN SESNNSEIDL NLGISLSTGN APKQNGRLFH FPSNTYETQR GVSLRIDNEY MGKPVNTPLP YGSSDHRLYW
201: NGACPSYNNP AEGRATEKRS EAEGMMSNWG WQRPGQTSAV RPQPPGPQPP PLFSVAAASS GFSHFRPQPP NDNATRGYFY PHP
101: KKAYDKAAIN TNGREAVTNF EMSSYQNEIN SESNNSEIDL NLGISLSTGN APKQNGRLFH FPSNTYETQR GVSLRIDNEY MGKPVNTPLP YGSSDHRLYW
201: NGACPSYNNP AEGRATEKRS EAEGMMSNWG WQRPGQTSAV RPQPPGPQPP PLFSVAAASS GFSHFRPQPP NDNATRGYFY PHP
Arabidopsis Description
RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.