CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29538	Canola	nucleus	97.45	97.22
Bra017809.1-P	Field mustard	nucleus	97.22	96.99
CDY71282	Canola	nucleus	48.72	90.13
CDX69282	Canola	nucleus	83.53	90.0
CDY71179	Canola	nucleus	46.87	88.99
AT4G36920.1	Thale cress	nucleus	86.77	86.57
TraesCS2A01G514200.1	Wheat	nucleus	49.88	58.27
CDY12814	Canola	nucleus	47.8	57.06
Solyc03g044300.2.1	Tomato	nucleus	52.67	56.61
CDY01432	Canola	nucleus	47.1	56.39
GSMUA_Achr8P18550_001	Banana	endoplasmic reticulum, nucleus	46.17	54.97
VIT_07s0031g00220.t01	Wine grape	nucleus	60.56	51.48
KRH28441	Soybean	nucleus	58.47	50.81
Solyc02g093150.2.1	Tomato	nucleus	51.74	50.0
PGSC0003DMT400016585	Potato	nucleus	54.06	49.05
PGSC0003DMT400010231	Potato	nucleus	57.54	48.34
Os04t0649100-03	Rice	nucleus	51.51	48.26
Solyc02g064960.2.1	Tomato	nucleus	55.68	47.62
Zm00001d026448_P001	Maize	nucleus	45.48	47.46
PGSC0003DMT400065501	Potato	nucleus	54.99	46.93
TraesCS2B01G542400.2	Wheat	nucleus	51.28	45.66
TraesCS2D01G515800.1	Wheat	nucleus	51.28	45.47
CDY04573	Canola	nucleus	46.64	44.27
CDY15760	Canola	nucleus	46.4	44.05
OQU82446	Sorghum	endoplasmic reticulum, vacuole	38.98	42.42
Zm00001d002075_P001	Maize	nucleus	52.2	42.21
CDX95767	Canola	nucleus	40.84	42.21
CDX83296	Canola	nucleus	40.84	40.37
CDY07510	Canola	nucleus	30.63	40.24
CDY68119	Canola	nucleus	31.55	39.65
CDX73419	Canola	nucleus	31.32	39.24
CDY09223	Canola	nucleus	34.11	34.11
CDY31576	Canola	nucleus	35.5	33.85
CDX80199	Canola	nucleus	35.5	33.7
CDY71682	Canola	nucleus	11.83	24.64
CDY23833	Canola	nucleus	21.11	21.41
CDY22537	Canola	nucleus	21.11	21.26
CDX79921	Canola	nucleus	21.11	21.11
CDY35402	Canola	nucleus	19.72	20.68
CDY19560	Canola	nucleus	3.48	14.56

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	GO:A0A078JCE8	UniProt:A0A078JCE8	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	EnsemblPlants:CDY62228	ProteinID:CDY62228	ProteinID:CDY62228.1	InterPro:DNA-bd_dom_sf	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009791
GO:GO:0009838	GO:GO:0009908	GO:GO:0009987	GO:GO:0010227	GO:GO:0048316	GO:GO:0048461
GO:GO:0080187	EnsemblPlantsGene:GSBRNA2T00036087001	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF18	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0004EAE690
SEG:seg	:	:	:	:	:

Description

BnaCnng39690DBnaCnng39690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JCE8]

Coordinates

chrLK034116:+:34152..36858

Molecular Weight (calculated)

47688.0 Da

IEP (calculated)

6.907

GRAVY (calculated)

-0.741

Length

431 amino acids

Sequence
(BLAST)

001: MWDLNDSPHQ TVRQEESEEF CYSSPGKRVG SFSNSSSSAV VIEDGSDDDE PNRVRANNPL ITHQFFPEME SSVGDNGGGG PGSSFPRSHW FGVQFSQSDL
101: ATGSSVGKPA TVGAVVEPAQ PLKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVEADINF NIEDYDNDMK
201: QMTNLTKEEF VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE VEAARAYDKA AIKCNGKDAV TNFDSSIYDE ELNAESSGNP
301: IQHDHNLDLS LGNSVNSKHN GQDMRLKMNQ QDSLHSNEIL GLGPGMVNYI PDSVHQFPGS SNIHGGGGFS LFPVTENHQF EGRTTANQVL ANAAASSGFS
401: PHNHHQIFNS TPTSHQNWLQ TNGFQPPLMR P

Best Arabidopsis Sequence Match ( AT4G36920.2 )
(BLAST)

001: MWDLNDAPHQ TQREEESEEF CYSSPSKRVG SFSNSSSSAV VIEDGSDDDE LNRVRPNNPL VTHQFFPEMD SNGGGVASGF PRAHWFGVKF CQSDLATGSS
101: AGKATNVAAA VVEPAQPLKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNIDD YDDDLKQMTN
201: LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEVEAA RAYDKAAIKC NGKDAVTNFD PSIYDEELNA ESSGNPTTPQ
301: DHNLDLSLGN SANSKHKSQD MRLRMNQQQQ DSLHSNEVLG LGQTGMLNHT PNSNHQFPGS SNIGSGGGFS LFPAAENHRF DGRASTNQVL TNAAASSGFS
401: PHHHNQIFNS TSTPHQNWLQ TNGFQPPLMR PS

Arabidopsis Description

AP2Floral homeotic protein APETALA 2 [Source:UniProtKB/Swiss-Prot;Acc:P47927]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.