Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83296 | Canola | nucleus | 94.96 | 90.83 |
| CDY04573 | Canola | nucleus | 84.65 | 77.75 |
| CDY15760 | Canola | nucleus | 84.41 | 77.53 |
| AT2G28550.3 | Thale cress | nucleus | 82.97 | 74.57 |
| CDY19560 | Canola | nucleus | 17.03 | 68.93 |
| GSMUA_AchrUn_... | Banana | nucleus | 43.88 | 52.14 |
| GSMUA_Achr8P01980_001 | Banana | nucleus | 40.77 | 45.95 |
| Solyc09g007260.2.1 | Tomato | nucleus | 47.72 | 43.74 |
| KRH22956 | Soybean | nucleus | 49.64 | 43.49 |
| GSMUA_Achr10P... | Banana | nucleus | 45.56 | 42.99 |
| KRH10362 | Soybean | nucleus | 49.64 | 42.68 |
| PGSC0003DMT400071732 | Potato | nucleus | 46.76 | 42.67 |
| CDY12814 | Canola | nucleus | 36.93 | 42.66 |
| CDY01432 | Canola | nucleus | 36.69 | 42.5 |
| GSMUA_Achr9P03060_001 | Banana | nucleus | 44.12 | 42.49 |
| PGSC0003DMT400028706 | Potato | nucleus | 44.84 | 42.02 |
| CDX69282 | Canola | nucleus | 40.29 | 42.0 |
| GSMUA_Achr6P33140_001 | Banana | nucleus | 47.96 | 41.93 |
| Solyc10g084340.1.1 | Tomato | nucleus | 46.28 | 41.77 |
| CDY68119 | Canola | nucleus | 34.05 | 41.4 |
| GSMUA_Achr5P29290_001 | Banana | nucleus | 42.45 | 41.16 |
| CDY07510 | Canola | nucleus | 32.37 | 41.16 |
| CDY09223 | Canola | nucleus | 42.45 | 41.07 |
| CDY62228 | Canola | nucleus | 42.21 | 40.84 |
| GSMUA_Achr11P... | Banana | nucleus | 42.21 | 40.74 |
| CDX73419 | Canola | nucleus | 33.57 | 40.7 |
| CDY31576 | Canola | nucleus | 43.88 | 40.49 |
| CDX80199 | Canola | nucleus | 43.88 | 40.31 |
| CDY29538 | Canola | nucleus | 41.49 | 40.05 |
| GSMUA_Achr6P34420_001 | Banana | nucleus | 45.32 | 39.71 |
| GSMUA_Achr5P07270_001 | Banana | nucleus | 45.32 | 38.81 |
| GSMUA_Achr8P21030_001 | Banana | nucleus | 46.28 | 38.45 |
| GSMUA_Achr9P04270_001 | Banana | nucleus | 41.49 | 36.73 |
| CDY71179 | Canola | nucleus | 19.18 | 35.24 |
| CDY71282 | Canola | nucleus | 19.42 | 34.76 |
| CDY23833 | Canola | nucleus | 21.1 | 20.71 |
| CDY22537 | Canola | nucleus | 20.86 | 20.33 |
| CDX79921 | Canola | nucleus | 20.86 | 20.19 |
| CDY35402 | Canola | nucleus | 19.66 | 19.95 |
| CDY71682 | Canola | nucleus | 9.59 | 19.32 |
Protein Annotations
| MapMan:15.5.7.3 | Gene3D:3.30.730.10 | GO:A0A078E3P5 | InterPro:AP2-like_transcript_factor | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDX95767 | ProteinID:CDX95767 | ProteinID:CDX95767.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00101683001 | InterPro:IPR001471 |
| InterPro:IPR036955 | PFAM:PF00847 | PFscan:PS51032 | PANTHER:PTHR32467 | PANTHER:PTHR32467:SF46 | SMART:SM00380 |
| SUPFAM:SSF54171 | UniParc:UPI0004EE7ED6 | SEG:seg | : | : | : |
Description
BnaC03g26480D
Coordinates
chrLK031890:+:1313626..1316199
Molecular Weight (calculated)
45572.3 Da
IEP (calculated)
7.110
GRAVY (calculated)
-0.731
Length
417 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLDLNLDAD SPESTQYGDS NADRQTSDGS GNRVDESGTS TSSVINADAD DDSCSTRAFT HSFDILKVGG GDESTASIAG VTKEFFPVAG DCGHLRGSSS
101: RSWMDLSFDT KSVAPAPAPA QVRKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVDADINF TVGDYEEDMK
201: QVQNLSKEEF VHILRRQSTG FSRGSSKYRG VTLHKCGGWE AGMAQLLAKK AYNKAAISSN GREAVTNFEL STYQNEINSE SGHDKLDLNL GISLSPGNAA
301: KQNGRFSHFP SNPYETPPGV SWTIDTEFMG KPVNTPLPYG SSDHRANFKE NISEAEGGMM SNWGWHRPGK TSTMRPQQPG AQPPQLFSVA AASSGFSNFR
401: QQPPSENASH GYFYPQF
101: RSWMDLSFDT KSVAPAPAPA QVRKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVDADINF TVGDYEEDMK
201: QVQNLSKEEF VHILRRQSTG FSRGSSKYRG VTLHKCGGWE AGMAQLLAKK AYNKAAISSN GREAVTNFEL STYQNEINSE SGHDKLDLNL GISLSPGNAA
301: KQNGRFSHFP SNPYETPPGV SWTIDTEFMG KPVNTPLPYG SSDHRANFKE NISEAEGGMM SNWGWHRPGK TSTMRPQQPG AQPPQLFSVA AASSGFSNFR
401: QQPPSENASH GYFYPQF
001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKAY DKAAINTNGR EAVTNFEMSS YQNEINSESN
301: NSEIDLNLGI SLSTGNAPKQ NGRLFHFPSN TYETQRGVSL RIDNEYMGKP VNTPLPYGSS DHRLYWNGAC PSYNNPAEGR ATEKRSEAEG MMSNWGWQRP
401: GQTSAVRPQP PGPQPPPLFS VAAASSGFSH FRPQPPNDNA TRGYFYPHP
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKAY DKAAINTNGR EAVTNFEMSS YQNEINSESN
301: NSEIDLNLGI SLSTGNAPKQ NGRLFHFPSN TYETQRGVSL RIDNEYMGKP VNTPLPYGSS DHRLYWNGAC PSYNNPAEGR ATEKRSEAEG MMSNWGWQRP
401: GQTSAVRPQP PGPQPPPLFS VAAASSGFSH FRPQPPNDNA TRGYFYPHP
Arabidopsis Description
RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.