Factsheet for GSMUA_Achr5P07270_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	45.17	62.68
GSMUA_Achr10P...	Banana	nucleus	54.0	59.5
GSMUA_Achr8P01980_001	Banana	nucleus	44.97	59.19
GSMUA_Achr8P21030_001	Banana	nucleus	57.49	55.78
GSMUA_Achr9P03060_001	Banana	nucleus	47.64	53.58
KRG89074	Soybean	nucleus	47.02	51.12
GSMUA_Achr11P...	Banana	nucleus	44.76	50.46
GSMUA_Achr6P33140_001	Banana	nucleus	49.08	50.1
GSMUA_Achr5P29290_001	Banana	nucleus	44.15	50.0
GSMUA_Achr4P06100_001	Banana	nucleus	34.5	49.41
VIT_06s0004g03590.t01	Wine grape	nucleus	50.31	49.0
GSMUA_Achr1P26080_001	Banana	nucleus	37.58	48.8
GSMUA_Achr8P18550_001	Banana	endoplasmic reticulum, nucleus	36.14	48.62
KRH22956	Soybean	nucleus	46.82	47.9
KRH24963	Soybean	nucleus	47.84	47.26
Solyc10g084340.1.1	Tomato	nucleus	44.76	47.19
PGSC0003DMT400028706	Potato	nucleus	42.92	46.97
CDY15760	Canola	nucleus	43.53	46.7
Bra011939.1-P	Field mustard	nucleus	43.53	46.7
CDY04573	Canola	nucleus	43.53	46.7
GSMUA_Achr6P34420_001	Banana	nucleus	45.59	46.64
Solyc06g075510.2.1	Tomato	nucleus	45.38	46.62
PGSC0003DMT400071732	Potato	nucleus	43.53	46.39
AT2G28550.3	Thale cress	nucleus	43.74	45.91
KRH10362	Soybean	nucleus	45.59	45.77
CDX95767	Canola	nucleus	38.81	45.32
KRH67634	Soybean	nucleus	42.71	45.32
Solyc09g007260.2.1	Tomato	nucleus	41.89	44.84
Bra000487.1-P	Field mustard	nucleus	38.19	44.6
CDX83296	Canola	nucleus	39.22	43.81
GSMUA_Achr9P22540_001	Banana	nucleus	32.65	43.8
PGSC0003DMT400016881	Potato	nucleus	22.79	43.36
GSMUA_Achr4P12860_001	Banana	nucleus	35.32	43.32
GSMUA_Achr9P04270_001	Banana	nucleus	41.89	43.31
VIT_08s0040g03180.t01	Wine grape	nucleus	43.94	43.23
KRG95917	Soybean	mitochondrion	43.33	42.71
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular	13.96	41.21
GSMUA_Achr1P09830_001	Banana	nucleus	38.19	40.7
GSMUA_Achr6P02730_001	Banana	nucleus	13.76	40.61
GSMUA_AchrUn_...	Banana	nucleus	36.55	40.45
GSMUA_Achr3P28340_001	Banana	nucleus	36.55	40.45
GSMUA_Achr3P13180_001	Banana	nucleus	40.45	38.78
GSMUA_Achr7P16540_001	Banana	mitochondrion	15.61	27.64
GSMUA_Achr6P30870_001	Banana	nucleus	15.81	26.1
GSMUA_AchrUn_...	Banana	nucleus	15.81	22.38

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr5G07270_001
EnsemblPlants:GSMUA_Achr5P07270_001	EnsemblPlants:GSMUA_Achr5T07270_001	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0SWF6	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF46	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0002964E0C	SEG:seg	:	:	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr5G07270_001]

Coordinates

chr5:-:5249489..5253127

Molecular Weight (calculated)

53903.9 Da

IEP (calculated)

6.844

GRAVY (calculated)

-0.576

Length

487 amino acids

Sequence
(BLAST)

001: MLDLNVASAG ESTCVGEKPI LEGAGGGHIV SSETSESCVH NAEASTNAAD ENSFSTRQVG APAMEFGILM SSASAEGEND VDEGIEVDRN DGVQEPGLIT
101: RQLFPPEPVV MNGLRPFVEA SFLPSSSSPQ WKDLSFYQAN VPTKVTVLHQ QQWQQQQPKP QQQQVKRSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK
201: QVYLGGFDTS YAAARAYDRA AIKFRGVDAD INFNLSDYEE DLEQMRNLSK EEFVHILRRQ STGFTRGSSK YRGVTRHKCG RWEARMGQLL GKKYIYLGLF
301: DSEIEAARTY DKAAIKCHGK EAVTNFDPRT YVEDLLAGAG SEGHNVDLDL RISQPIVDSP KNVKNPTDII SSYGPFGATA AEKVYANNPS WHPTSVPQHN
401: NLRLQNFHAW TARNPAFHSN TEERVGEKWL MVGMQALPNW EWQMHGPTLS PLFSPAASSG FSTASVTAAI TALNLPASAT PPFPPTR

Best Arabidopsis Sequence Match ( AT2G28550.3 )
(BLAST)

001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI NTNGREAVTN
301: FEMSSYQNEI NSESNNSEID LNLGISLSTG NAPKQNGRLF HFPSNTYETQ RGVSLRIDNE YMGKPVNTPL PYGSSDHRLY WNGACPSYNN PAEGRATEKR
401: SEAEGMMSNW GWQRPGQTSA VRPQPPGPQP PPLFSVAAAS SGFSHFRPQP PNDNATRGYF YPHP

Arabidopsis Description

RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.