Factsheet for Solyc10g084340.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028706	Potato	nucleus	86.58	89.89
GSMUA_AchrUn_...	Banana	nucleus	45.45	59.83
Solyc09g007260.2.1	Tomato	nucleus	53.03	53.85
KRG89074	Soybean	nucleus	52.16	53.79
GSMUA_Achr8P01980_001	Banana	nucleus	42.21	52.7
GSMUA_Achr10P...	Banana	nucleus	49.57	51.81
KRH22956	Soybean	nucleus	51.73	50.21
KRH24963	Soybean	nucleus	51.95	48.68
GSMUA_Achr9P03060_001	Banana	nucleus	45.02	48.04
KRH10362	Soybean	nucleus	49.35	47.01
CDY04573	Canola	nucleus	46.1	46.92
Bra011939.1-P	Field mustard	nucleus	46.1	46.92
GSMUA_Achr11P...	Banana	nucleus	43.72	46.76
GSMUA_Achr6P33140_001	Banana	nucleus	48.27	46.75
CDY15760	Canola	nucleus	45.89	46.7
CDX95767	Canola	nucleus	41.77	46.28
Bra000487.1-P	Field mustard	nucleus	41.56	46.04
AT2G28550.3	Thale cress	nucleus	46.1	45.91
Solyc03g044300.2.1	Tomato	nucleus	39.83	45.89
GSMUA_Achr5P29290_001	Banana	nucleus	42.64	45.81
Solyc04g049800.2.1	Tomato	nucleus	39.18	45.48
CDX83296	Canola	nucleus	42.86	45.41
GSMUA_Achr5P07270_001	Banana	nucleus	47.19	44.76
Solyc11g072600.1.1	Tomato	nucleus	46.32	44.49
Solyc06g075510.2.1	Tomato	nucleus	44.59	43.46
GSMUA_Achr8P21030_001	Banana	nucleus	46.75	43.03
GSMUA_Achr6P34420_001	Banana	nucleus	43.72	42.44
GSMUA_Achr9P04270_001	Banana	nucleus	41.99	41.19
Solyc02g093150.2.1	Tomato	nucleus	38.31	39.69
Solyc02g064960.2.1	Tomato	nucleus	43.29	39.68
Solyc02g030200.1.1	Tomato	nucleus	4.33	35.09
Solyc02g030210.2.1	Tomato	nucleus	17.75	23.36
Solyc03g123430.2.1	Tomato	nucleus	21.43	19.3

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	UniProt:K4D3M0	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467
PANTHER:PTHR32467:SF46	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:Solyc10g084340.1	EnsemblPlants:Solyc10g084340.1.1	UniParc:UPI000276A267
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr10:-:63927423..63930569

Molecular Weight (calculated)

51084.0 Da

IEP (calculated)

6.510

GRAVY (calculated)

-0.677

Length

462 amino acids

Sequence
(BLAST)

001: MFDLNLSFDD VSVEPISVLA SEKVDEMLFN QMENSGTSNS SIVNMETSST AADDEYFSPD HHRDGYAFDI LKSDREAGDR GGFVVKELFP LVNGEVGLDL
101: SANYGDLNEQ RIGKTPQQIL QAKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGLDADINF NISDYEEDLK
201: QMKNFSKEEF VHILRRQSNG FSRGSSKYRG VTLHKCGRWE ARMGQLLGKK YIYLGLFDNE IEAARAYDKA AIKCNGREAV TNFEPNTYEE ALSSEADTGG
301: TDHNIDLNLG ISLSSYAENQ HGNTSQIGNF QCQHGSNGLP EHHGEVRTPA STTLKSKLLL HGEHTLTQNP LHWNGSNGKG SAIEKGSEVD TSLKWMGHDQ
401: NTYDGSPTLP LFSTAASSGF GNSANTAPSA ASHQLHFGSG ALPFPHSPSL TNMNLSHHYC RS

Best Arabidopsis Sequence Match ( AT2G28550.3 )
(BLAST)

001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI NTNGREAVTN
301: FEMSSYQNEI NSESNNSEID LNLGISLSTG NAPKQNGRLF HFPSNTYETQ RGVSLRIDNE YMGKPVNTPL PYGSSDHRLY WNGACPSYNN PAEGRATEKR
401: SEAEGMMSNW GWQRPGQTSA VRPQPPGPQP PPLFSVAAAS SGFSHFRPQP PNDNATRGYF YPHP

Arabidopsis Description

RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.