Factsheet for Solyc11g072600.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065313	Potato	nucleus	94.18	90.78
Solyc06g075510.2.1	Tomato	nucleus	56.76	57.59
Solyc04g049800.2.1	Tomato	nucleus	41.16	49.75
Solyc09g007260.2.1	Tomato	nucleus	45.53	48.13
OQU77289	Sorghum	nucleus	42.41	46.68
Solyc03g044300.2.1	Tomato	nucleus	38.88	46.63
Solyc10g084340.1.1	Tomato	nucleus	44.49	46.32
Zm00001d010987_P001	Maize	nucleus	37.01	46.11
TraesCS1A01G058400.1	Wheat	nucleus	48.65	45.88
TraesCS1D01G059200.1	Wheat	nucleus	48.65	45.79
TraesCS1B01G076300.1	Wheat	nucleus	48.65	45.7
HORVU1Hr1G011800.4	Barley	nucleus	48.65	45.53
VIT_13s0019g03550.t01	Wine grape	nucleus	45.53	44.06
Os05t0121600-01	Rice	nucleus	46.78	43.95
Zm00001d035512_P001	Maize	nucleus	45.53	42.86
Solyc02g093150.2.1	Tomato	nucleus	39.29	42.38
Solyc02g064960.2.1	Tomato	nucleus	40.33	38.49
Solyc02g030200.1.1	Tomato	nucleus	3.74	31.58
Solyc02g030210.2.1	Tomato	nucleus	14.76	20.23
Solyc03g123430.2.1	Tomato	nucleus	19.75	18.52

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	UniProt:K4DAW7	PFAM:PF00847	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF46
SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:Solyc11g072600.1	EnsemblPlants:Solyc11g072600.1.1	UniParc:UPI0002769CBF	SEG:seg

Description

No Description!

Coordinates

chr11:-:55773865..55776747

Molecular Weight (calculated)

53071.9 Da

IEP (calculated)

7.142

GRAVY (calculated)

-0.837

Length

481 amino acids

Sequence
(BLAST)

001: MMLDLNLNAI YDGKHSLADE SGSSNSSARN VEASSSAGDD ETCSTRAAGD MFAFNFDILK VGGGGSGSGG GETRRSCSNN DDEEGYDENR SDFVTQQLFP
101: MDNNAELNRT HTSRRPDWVD PSVDPPNTVS FREVQQMGRL QQQQQPVKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD TAHAAARAYD
201: RAAIKFRGVD ADINFNLSDY EEDMKQMKNL SKEEFVHVLR RQSTGFSRGS SKYRGVTLHK CGRWEARMGQ FLGKKAYDKA AIKCNGREAV TNFEPSAYEG
301: EINSNPQSEG SQQDLDLNLG IATSSPKEVE RSSSFQYHPY DMQEASKSQM DKSGSPIVGS SHYKALPAVT SEQAHLWNGA YSNLIPNYEE RVSGKRIDVG
401: TSHGHPNWAM QMHSQVGTTP LSMFSAAASS GFSTPATTAS ASQISGPNNP NTLNLSFASY SSPSTNTAQY YYQIRPQLPP P

Best Arabidopsis Sequence Match ( AT2G28550.1 )
(BLAST)

001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKAY DKAAINTNGR EAVTNFEMSS YQNEINSESN
301: NSEIDLNLGI SLSTGNAPKQ NGRLFHFPSN TYETQRGVSL RIDNEYMGKP VNTPLPYGSS DHRLYWNGAC PSYNNPAEGR ATEKRSEAEG MMSNWGWQRP
401: GQTSAVRPQP PGPQPPPLFS VAAASSGFSH FRPQPPNDNA TRGYFYPHP

Arabidopsis Description

RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.