Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- peroxisome 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g049800.2.1 | Tomato | nucleus | 31.58 | 4.52 |
| Solyc03g044300.2.1 | Tomato | nucleus | 31.58 | 4.49 |
| Solyc10g084340.1.1 | Tomato | nucleus | 35.09 | 4.33 |
| TraesCS7B01G440400.1 | Wheat | nucleus | 29.82 | 4.2 |
| Solyc09g007260.2.1 | Tomato | nucleus | 33.33 | 4.18 |
| Solyc06g075510.2.1 | Tomato | nucleus | 33.33 | 4.01 |
| TraesCS7D01G512600.1 | Wheat | nucleus | 29.82 | 3.92 |
| Zm00001d046621_P001 | Maize | nucleus | 26.32 | 3.82 |
| Solyc02g093150.2.1 | Tomato | nucleus | 29.82 | 3.81 |
| Solyc11g072600.1.1 | Tomato | nucleus | 31.58 | 3.74 |
| Solyc03g123430.2.1 | Tomato | nucleus | 33.33 | 3.7 |
| Solyc02g064960.2.1 | Tomato | nucleus | 31.58 | 3.57 |
| OQU76762 | Sorghum | nucleus | 26.32 | 3.18 |
| HORVU7Hr1G116220.4 | Barley | nucleus | 26.32 | 2.53 |
| Solyc02g030210.2.1 | Tomato | nucleus | 10.53 | 1.71 |
| Os06t0639200-01 | Rice | nucleus | 3.51 | 0.6 |
| CDY19560 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Solyc02g030200.1.1 | EnsemblPlantsGene:Solyc02g030200.1 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:AP2-like_transcript_factor |
| ncoils:Coil | PANTHER:PTHR32467 | PANTHER:PTHR32467:SF32 | UniParc:UPI0002768BD4 | UniProt:K4B571 | MapMan:35.1 |
Description
No Description!
Coordinates
chr2:+:25304741..25304914
Molecular Weight (calculated)
6401.0 Da
IEP (calculated)
11.125
GRAVY (calculated)
-0.849
Length
57 amino acids
Sequence
(BLAST)
(BLAST)
1: MGHIGTDQLL LYRGLKKAKK ERGYTAKERI SKMPPCTAGK RSSIYRGVTR YGTKGKL
001: MASVSSSDQG PKTEAGCSGG GGGESSETVA ASDQMLLYRG FKKAKKERGC TAKERISKMP PCTAGKRSSI YRGVTRFGCE LGVVLSVLEY GMFGLVDMHF
101: VSRLKLEEMS RHRWTGRYEA HLWDKSTWNQ NQNKKGKQVY LGAYDDEEAA ARAYDLAALK YWGPGTLINF PVTDYTRDLE EMQNLSREEY LASLRRKSSG
201: FSRGIAKYRG LQSRWDASAS RMPGPEYFSN IHYGAGDDRG TEGDFLGSFC LERKIDLTGY IKWWGANKNR QPESSSKASE DANVEDAGTE LKTLEHTSHA
301: TEPYKAPNLG VLCGTQRKEK EISSPSSSSA LSILSQSPAF KSLEEKVLKI QESCNNENDE NANRNIINME KNNGKAIEKP VVSHGVALGG AAALSLQKSM
401: YPLTSLLTAP LLTNYNTLDP LADPILWTPF LPSGSSLTSE VTKTETSCST YSYLPQEK
101: VSRLKLEEMS RHRWTGRYEA HLWDKSTWNQ NQNKKGKQVY LGAYDDEEAA ARAYDLAALK YWGPGTLINF PVTDYTRDLE EMQNLSREEY LASLRRKSSG
201: FSRGIAKYRG LQSRWDASAS RMPGPEYFSN IHYGAGDDRG TEGDFLGSFC LERKIDLTGY IKWWGANKNR QPESSSKASE DANVEDAGTE LKTLEHTSHA
301: TEPYKAPNLG VLCGTQRKEK EISSPSSSSA LSILSQSPAF KSLEEKVLKI QESCNNENDE NANRNIINME KNNGKAIEKP VVSHGVALGG AAALSLQKSM
401: YPLTSLLTAP LLTNYNTLDP LADPILWTPF LPSGSSLTSE VTKTETSCST YSYLPQEK
Arabidopsis Description
Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G41710]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.