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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400023711 Potato nucleus 50.88 94.91
PGSC0003DMT400023709 Potato nucleus 39.57 94.86
HORVU2Hr1G063070.1 Barley nucleus 8.19 42.86
VIT_04s0023g00970.t01 Wine grape nucleus 9.75 42.73
Solyc02g030200.1.1 Tomato nucleus 3.7 33.33
KXG24410 Sorghum mitochondrion 5.26 32.93
Zm00001d037511_P001 Maize nucleus 12.09 31.31
Os06t0658000-00 Rice endoplasmic reticulum, extracellular 9.36 26.23
Solyc03g044300.2.1 Tomato nucleus 20.27 25.94
Solyc02g064960.2.1 Tomato nucleus 21.64 22.02
CDY71682 Canola nucleus 8.77 21.74
Solyc10g084340.1.1 Tomato nucleus 19.3 21.43
Solyc02g093150.2.1 Tomato nucleus 18.52 21.3
Solyc09g007260.2.1 Tomato nucleus 18.52 20.88
Solyc06g075510.2.1 Tomato nucleus 19.1 20.68
Solyc04g049800.2.1 Tomato nucleus 15.4 19.85
Solyc11g072600.1.1 Tomato nucleus 18.52 19.75
Solyc02g030210.2.1 Tomato nucleus 13.26 19.37
Protein Annotations
MapMan:15.5.7.3Gene3D:3.30.730.10InterPro:AP2-like_transcript_factorInterPro:AP2/ERF_domInterPro:AP2/ERF_dom_sfncoils:Coil
InterPro:DNA-bd_dom_sfGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351
GO:GO:0006355GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
InterPro:IPR001471InterPro:IPR036955UniProt:K4BN42PFAM:PF00847PRINTS:PR00367PFscan:PS51032
PANTHER:PTHR32467PANTHER:PTHR32467:SF47SMART:SM00380SUPFAM:SSF54171EnsemblPlantsGene:Solyc03g123430.2EnsemblPlants:Solyc03g123430.2.1
UniParc:UPI00027659F6SEG:seg::::
Description
No Description!
Coordinates
chr3:-:70282955..70286924
Molecular Weight (calculated)
56906.7 Da
IEP (calculated)
5.242
GRAVY (calculated)
-0.753
Length
513 amino acids
Sequence
(BLAST)
001: MSNWLGFSLT PDFRIDDDDE EEVKNYERRN EAAENTPVSV MPLSTNRSLC MMDPFPRCEP TEDCWRYENH EMSTANNPEE EEGPKLEDFL GCCYSNSPSN
101: EEQQISEINV NIPPSINQSD HEQHQLEIGA NMKLIQSPQM MIQNSQLQSS HHEFAHSTSS VYHLPFDGAT SVSGFKSWLR QASVAAPLMS SAEEIVNPSN
201: CQALSLAAAP KKRPVAVKNG GGSKESVPRK SIDTFGQRTS QYRGVTRHRW TGRYEAHLWD NSCRKEGQTR KGRQGGYDTE EKAARAYDLA ALKYWGPNTH
301: INSPEKHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG TSAVTNFDIS KYDVKRICSS STLITGDLAK RSPSKDSVVC PSSYEDYSSC
401: TTSPQPILAI TNGEQLQQPI DSFMNMVPLM GAAGSSSRSS SNAPSPKCSG SGEMSCDFGV GLEYPQAYYS PVQVQDHKFE DGSKENDDNS SSSGQIGNMD
501: LVHPVPMFAL WNQ
Best Arabidopsis Sequence Match ( AT1G51190.1 )
(BLAST)
001: MNSNNWLAFP LSPTHSSLPP HIHSSQNSHF NLGLVNDNID NPFQNQGWNM INPHGGGGEG GEVPKVADFL GVSKSGDHHT DHNLVPYNDI HQTNASDYYF
101: QTNSLLPTVV TCASNAPNNY ELQESAHNLQ SLTLSMGSTG AAAAEVATVK ASPAETSADN SSSTTNTSGG AIVEATPRRT LETFGQRTSI YRGVTRHRWT
201: GRYEAHLWDN SCRREGQSRK GRQVYLGGYD KEEKAARAYD LAALKYWGPS TTTNFPITNY EKEVEEMKNM TRQEFVASIR RKSSGFSRGA SMYRGVTRHH
301: QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFE INRYDVKAIL ESNTLPIGGG AAKRLKEAQA LESSRKREEM IALGSNFHQY
401: GAASGSSSVA SSSRLQLQPY PLSIQQPFEH LHHHQPLLTL QNNNDISQYH DSFSYIQTQL HLHQQQTNNY LQSSSHTSQL YNAYLQSNPG LLHGFVSDNN
501: NTSGFLGNNG IGIGSSSTVG SSAEEEFPAV KVDYDMPPSG GATGYGGWNS GESAQGSNPG GVFTMWNE
Arabidopsis Description
PLT2AP2-like ethylene-responsive transcription factor PLT2 [Source:UniProtKB/Swiss-Prot;Acc:Q5YGP7]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.